{ "type": "genome", "identifier": "GCF_003202235.1", "organism": "Prauserella flavalba", "title": "Prauserella flavalba", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bielefeld University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003202235.1", "bioproject": "PRJNA224116", "biosample": "SAMN05284050", "wgs_master": "MASU00000000.1", "refseq_category": "reference genome", "taxid": "1477506", "species_taxid": "1477506", "organism_name": "Prauserella flavalba", "infraspecific_name": "strain=YIM 121212", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/07", "asm_name": "ASM320223v1", "asm_submitter": "Bielefeld University", "gbrs_paired_asm": "GCA_003202235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/202/235/GCF_003202235.1_ASM320223v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8097838", "genome_size_ungapped": "8097838", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003202235.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "7909", "protein_coding_gene_count": "7747", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-07", "dateModified": "2018-06-07", "datePublished": "2018-06-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Prauserella flavalba" ], "sample_taxid": [ "1477506" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Yunnan Province" ], "sample_host_location_id": [], "data_size": "2.170 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8097838", "Number of Sequences": "39", "Longest Sequences (bp)": "1820440", "N50 (bp)": "442250", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.8", "Number of CDSs": "7926", "Average Protein Length": "312.5", "Coding Ratio (%)": "91.7", "Number of rRNAs": "9", "Number of tRNAs": "59", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prauserella cavernicola", "strain": "strain=ASG 168", "accession": "GCA_016595675.1", "taxid": 2800127, "species_taxid": 2800127, "relation_to_type": "type", "validated": true, "ani": 86.1916, "matched_fragments": 1656, "total_fragments": 2680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella muralis", "strain": "strain=DSM 45305", "accession": "GCA_003202285.1", "taxid": 588067, "species_taxid": 588067, "relation_to_type": "type", "validated": true, "ani": 84.0117, "matched_fragments": 1528, "total_fragments": 2680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella muralis", "strain": "strain=DSM 45305", "accession": "GCA_007993965.1", "taxid": 588067, "species_taxid": 588067, "relation_to_type": "type", "validated": true, "ani": 83.9654, "matched_fragments": 1518, "total_fragments": 2680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis methanolica", "strain": "strain=239", "accession": "GCA_000739085.1", "taxid": 1814, "species_taxid": 1814, "relation_to_type": "type", "validated": true, "ani": 80.8848, "matched_fragments": 1205, "total_fragments": 2680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis methanolica", "strain": "strain=239", "accession": "GCA_000371885.1", "taxid": 1814, "species_taxid": 1814, "relation_to_type": "type", "validated": true, "ani": 80.8777, "matched_fragments": 1218, "total_fragments": 2680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis acididurans", "strain": "strain=K13G38", "accession": "GCA_012328925.1", "taxid": 2724524, "species_taxid": 2724524, "relation_to_type": "type", "validated": true, "ani": 80.8614, "matched_fragments": 1191, "total_fragments": 2680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermalba", "strain": "strain=NRRL B-24845", "accession": "GCA_003385215.1", "taxid": 944492, "species_taxid": 944492, "relation_to_type": "type", "validated": true, "ani": 80.7453, "matched_fragments": 1165, "total_fragments": 2680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis arida", "strain": "strain=CGMCC 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860233, "species_taxid": 860233, "relation_to_type": "type", "validated": true, "ani": 80.4653, "matched_fragments": 1172, "total_fragments": 2680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharomonospora cyanea", "strain": "strain=NA-134", "accession": "GCA_000244975.1", "taxid": 40989, "species_taxid": 40989, "relation_to_type": "type", "validated": true, "ani": 80.458, "matched_fragments": 958, "total_fragments": 2680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis viridis", "strain": "strain=DSM 45668", "accession": "GCA_011758765.1", "taxid": 185678, "species_taxid": 185678, "relation_to_type": "type", "validated": true, "ani": 80.3885, "matched_fragments": 1019, "total_fragments": 2680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis acidiphila", "strain": "strain=JCM 30562", "accession": "GCA_007713745.1", "taxid": 715473, "species_taxid": 715473, "relation_to_type": 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"matched_fragments": 1183, "total_fragments": 2680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis mediterranei", "strain": "strain=S699", "accession": "GCA_000220945.1", "taxid": 33910, "species_taxid": 33910, "relation_to_type": "type", "validated": true, "ani": 79.5542, "matched_fragments": 1152, "total_fragments": 2680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis vastitatis", "strain": "strain=H5", "accession": "GCA_002234595.1", "taxid": 1905142, "species_taxid": 1905142, "relation_to_type": "type", "validated": true, "ani": 79.4957, "matched_fragments": 1157, "total_fragments": 2680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis camponoti", "strain": "strain=A23", "accession": "GCA_902497555.1", "taxid": 2606593, "species_taxid": 2606593, "relation_to_type": "type", "validated": true, "ani": 79.4611, "matched_fragments": 1248, "total_fragments": 2680, 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