{ "type": "genome", "identifier": "GCF_003202435.1", "organism": "Flavobacterium cheongpyeongense", "title": "Flavobacterium cheongpyeongense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "INHA University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003202435.1", "bioproject": "PRJNA224116", "biosample": "SAMN09281180", "wgs_master": "QJHK00000000.1", "refseq_category": "reference genome", "taxid": "2212651", "species_taxid": "2212651", "organism_name": "Flavobacterium cheongpyeongense", "infraspecific_name": "strain=IMCC34759", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/07", "asm_name": "ASM320243v1", "asm_submitter": "INHA University", "gbrs_paired_asm": "GCA_003202435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/202/435/GCF_003202435.1_ASM320243v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5223205", "genome_size_ungapped": "5223205", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "89", "contig_count": "89", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003202435.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4360", "protein_coding_gene_count": "4254", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-07", "dateModified": "2018-06-07", "datePublished": "2018-06-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium cheongpyeongense" ], "sample_taxid": [ "2212651" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.461 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5223205", "Number of Sequences": "89", "Longest Sequences (bp)": "553325", "N50 (bp)": "179804", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.1", "Number of CDSs": "4239", "Average Protein Length": "353.4", "Coding Ratio (%)": "86.0", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium cheongpyeongense", "strain": "strain=IMCC34759", "accession": "GCA_003202435.1", "taxid": 2212651, "species_taxid": 2212651, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1710, "total_fragments": 1713, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium salmonis", "strain": "strain=CIP 111411", "accession": "GCA_903819435.1", "taxid": 2654844, "species_taxid": 2654844, "relation_to_type": "type", "validated": true, "ani": 86.0318, "matched_fragments": 1201, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hydrophilum", "strain": "strain=IMCC34758", "accession": "GCA_003202405.1", "taxid": 2211445, "species_taxid": 2211445, "relation_to_type": "type", "validated": true, "ani": 85.9342, "matched_fragments": 1209, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium limi", "strain": "strain=CGMCC 1.16060", "accession": "GCA_014644395.1", "taxid": 2045105, "species_taxid": 2045105, "relation_to_type": "type", "validated": true, "ani": 84.6417, "matched_fragments": 1153, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium limi", "strain": "strain=THG-AG6.4", "accession": "GCA_010645075.1", "taxid": 2045105, "species_taxid": 2045105, "relation_to_type": "type", "validated": true, "ani": 84.5979, "matched_fragments": 1178, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibisci", "strain": "strain=THG-HG1.4", "accession": "GCA_020026925.1", "taxid": 1914462, "species_taxid": 1914462, "relation_to_type": "type", "validated": true, "ani": 84.3234, "matched_fragments": 1105, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fluviatile", "strain": "strain=TAPY14", "accession": "GCA_010645065.1", "taxid": 1862387, "species_taxid": 1862387, "relation_to_type": "type", "validated": true, "ani": 84.0492, "matched_fragments": 1011, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 81.5288, "matched_fragments": 871, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium plurextorum", "strain": "strain=CCUG 60112", "accession": "GCA_002217395.1", "taxid": 1114867, "species_taxid": 1114867, "relation_to_type": "type", "validated": true, "ani": 81.2287, "matched_fragments": 813, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cupreum", "strain": "strain=CCM 8825", "accession": "GCA_003996965.1", "taxid": 2133766, "species_taxid": 2133766, "relation_to_type": "type", "validated": true, "ani": 81.2251, "matched_fragments": 798, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium collinsii", "strain": "", "accession": "GCA_902804485.1", "taxid": 1114861, "species_taxid": 1114861, "relation_to_type": "type", "validated": true, "ani": 81.2057, "matched_fragments": 757, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium circumlabens", "strain": "strain=P5626", "accession": "GCA_004345565.1", "taxid": 2133765, "species_taxid": 2133765, "relation_to_type": "type", "validated": true, "ani": 81.0814, "matched_fragments": 850, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium circumlabens", "strain": "strain=CCM 8828", "accession": "GCA_004369705.1", "taxid": 2133765, "species_taxid": 2133765, "relation_to_type": "type", "validated": true, "ani": 81.0303, "matched_fragments": 846, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 80.9825, "matched_fragments": 833, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 80.839, "matched_fragments": 799, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 80.7259, "matched_fragments": 859, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amniphilum", "strain": "strain=KYPY10", "accession": "GCA_023634845.1", "taxid": 1834035, "species_taxid": 1834035, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "cheongpyeongense" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }