{ "type": "genome", "identifier": "GCF_003205515.1", "organism": "Litorivita pollutaquae", "title": "Litorivita pollutaquae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xiamen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003205515.1", "bioproject": "PRJNA224116", "biosample": "SAMN09205228", "wgs_master": "QFVT00000000.1", "refseq_category": "reference genome", "taxid": "2200892", "species_taxid": "2200892", "organism_name": "Litorivita pollutaquae", "infraspecific_name": "strain=FSX-11", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/11", "asm_name": "ASM320551v1", "asm_submitter": "Xiamen University", "gbrs_paired_asm": "GCA_003205515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/205/515/GCF_003205515.1_ASM320551v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3421533", "genome_size_ungapped": "3421523", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "28", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003205515.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3251", "protein_coding_gene_count": "3172", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-11", "dateModified": "2018-06-11", "datePublished": "2018-06-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Litorivita pollutaquae" ], "sample_taxid": [ "2200892" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.960 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3421533", "Number of Sequences": "28", "Longest Sequences (bp)": "805626", "N50 (bp)": "443118", "Gap Ratio (%)": "0.000292", "GCcontent (%)": "58.7", "Number of CDSs": "3265", "Average Protein Length": "306.4", "Coding Ratio (%)": "87.7", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Litorivita pollutaquae", "strain": "strain=FSX-11", "accession": "GCA_003205515.1", "taxid": 2200892, "species_taxid": 2200892, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1127, "total_fragments": 1129, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Shimia marina", "strain": "strain=DSM 26895", "accession": "GCA_900112745.1", "taxid": 321267, "species_taxid": 321267, "relation_to_type": "type", "validated": true, "ani": 78.5632, "matched_fragments": 191, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia marina", "strain": "strain=CECT 7688", "accession": "GCA_001458175.1", "taxid": 321267, "species_taxid": 321267, "relation_to_type": "type", "validated": true, "ani": 78.5051, "matched_fragments": 189, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius nubinhibens", "strain": "strain=ISM", "accession": "GCA_000152625.1", "taxid": 314263, "species_taxid": 314263, "relation_to_type": "type", "validated": true, "ani": 77.7992, "matched_fragments": 290, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius lutimaris", "strain": "strain=DSM 28463", "accession": "GCA_900115165.1", "taxid": 1005928, "species_taxid": 1005928, "relation_to_type": "type", "validated": true, "ani": 77.7514, "matched_fragments": 277, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mediterraneus", "strain": "strain=CECT 5383", "accession": "GCA_001458435.1", "taxid": 340021, "species_taxid": 340021, "relation_to_type": "type", "validated": true, "ani": 77.6979, "matched_fragments": 228, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mediterraneus", "strain": "strain=DSM 16398", "accession": "GCA_900156595.1", "taxid": 340021, "species_taxid": 340021, "relation_to_type": "type", "validated": true, "ani": 77.6061, "matched_fragments": 223, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagivirga dicentrarchi", "strain": "strain=YLY04", "accession": "GCA_003316635.1", "taxid": 2250573, "species_taxid": 2250573, "relation_to_type": "type", "validated": true, "ani": 77.5783, "matched_fragments": 221, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pacificitalea manganoxidans", "strain": "strain=DY25", "accession": "GCA_002504165.1", "taxid": 1411902, "species_taxid": 1411902, "relation_to_type": "type", "validated": true, "ani": 77.4576, "matched_fragments": 213, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", "strain": "strain=DSM 14862", "accession": "GCA_022788655.1", "taxid": 225422, "species_taxid": 225422, "relation_to_type": "type", "validated": true, "ani": 77.3901, "matched_fragments": 219, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius autumnalis", "strain": "strain=CECT 5118", "accession": "GCA_001458255.1", "taxid": 2072972, "species_taxid": 2072972, "relation_to_type": "type", "validated": true, "ani": 77.3777, "matched_fragments": 222, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagivirga sediminicola", "strain": "strain=BH-SD19", "accession": "GCA_003072125.1", "taxid": 2170575, "species_taxid": 2170575, "relation_to_type": "type", "validated": true, "ani": 77.3362, "matched_fragments": 246, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sagittula marina", "strain": "strain=DSM 102235", "accession": "GCA_014196795.1", "taxid": 943940, "species_taxid": 943940, "relation_to_type": "type", "validated": true, "ani": 77.2665, "matched_fragments": 176, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagimonas phthalicica", "strain": "strain=DSM 26923", "accession": "GCA_004364805.1", "taxid": 1037362, "species_taxid": 1037362, "relation_to_type": "type", "validated": true, "ani": 77.2622, "matched_fragments": 232, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria haliotis", "strain": "strain=B1Z28", "accession": "GCA_013377785.1", "taxid": 2747601, "species_taxid": 2747601, "relation_to_type": "type", "validated": true, "ani": 77.2503, "matched_fragments": 144, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Puniceibacterium sediminis", "strain": "strain=DSM 29052", "accession": "GCA_900188035.1", "taxid": 1608407, "species_taxid": 1608407, "relation_to_type": "type", "validated": true, "ani": 77.0788, "matched_fragments": 172, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia gijangensis", "strain": "strain=DSM 100564", "accession": "GCA_900142085.1", "taxid": 1470563, "species_taxid": 1470563, "relation_to_type": "type", "validated": true, "ani": 77.0735, "matched_fragments": 162, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter flagellatus", "strain": "strain=MA21411-1", "accession": "GCA_021228235.1", "taxid": 2899119, "species_taxid": 2899119, "relation_to_type": "type", "validated": true, "ani": 77.0226, "matched_fragments": 206, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria sediminis", "strain": "strain=CAU 1488", "accession": "GCA_005938215.1", "taxid": 2583820, "species_taxid": 2583820, "relation_to_type": "type", "validated": true, "ani": 76.9334, "matched_fragments": 191, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola onchidii", "strain": "strain=XY-99", "accession": "GCA_004959925.1", "taxid": 2562279, "species_taxid": 2562279, "relation_to_type": "type", "validated": true, "ani": 76.7931, "matched_fragments": 218, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 76.7884, "matched_fragments": 173, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter brevis", "strain": "strain=DSM 11443", "accession": "GCA_900112755.1", "taxid": 74348, "species_taxid": 74348, "relation_to_type": "type", "validated": true, "ani": 76.7658, "matched_fragments": 211, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Profundibacter amoris", "strain": "strain=BAR1", "accession": "GCA_003544895.1", "taxid": 2171755, "species_taxid": 2171755, "relation_to_type": "type", "validated": true, "ani": 76.7234, "matched_fragments": 208, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola antarcticus", "strain": "strain=Ar-45", "accession": "GCA_002786285.1", "taxid": 1247613, "species_taxid": 1247613, "relation_to_type": "type", "validated": true, "ani": 76.6267, "matched_fragments": 202, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter litoreus", "strain": "strain=ASW11-22", "accession": "GCA_020165855.1", "taxid": 2876714, "species_taxid": 2876714, "relation_to_type": "type", "validated": true, "ani": 76.6022, "matched_fragments": 131, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus limosus", "strain": "strain=JCM 17370", "accession": "GCA_009711185.1", "taxid": 913252, "species_taxid": 913252, "relation_to_type": "type", "validated": true, "ani": 76.5852, "matched_fragments": 146, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodophyticola porphyridii", "strain": "strain=MA-7-27", "accession": "GCA_003688285.1", "taxid": 1852017, "species_taxid": 1852017, "relation_to_type": "type", "validated": true, "ani": 76.533, "matched_fragments": 145, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allosediminivita pacifica", "strain": "strain=CGMCC 1.12410", "accession": "GCA_014637495.1", "taxid": 1267769, "species_taxid": 1267769, "relation_to_type": "type", "validated": true, "ani": 76.3172, "matched_fragments": 122, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter sediminicola", "strain": "strain=JA983", "accession": "GCA_007668225.1", "taxid": 2584941, "species_taxid": 2584941, "relation_to_type": "type", "validated": true, "ani": 76.0395, "matched_fragments": 131, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003205515.1", "gtdb_species": "s__Litorivita pollutaquae", "ani": 100.0, "matched_fragments": 1127, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Litorivita", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "98.23", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_001458175.1", "gtdb_species": "s__Shimia marina", "ani": 78.5051, "matched_fragments": 189, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Shimia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.13", "min_intra_species_ani": "96.28", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900129395.1", "gtdb_species": "s__Ascidiaceihabitans pseudonitzschiae", "ani": 78.3416, "matched_fragments": 298, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Ascidiaceihabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_002366795.1", "gtdb_species": "s__UBA3069 sp002366795", "ani": 77.9338, "matched_fragments": 335, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__UBA3069", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900110775.1", "gtdb_species": "s__Litorimicrobium taeanense", "ani": 77.9039, "matched_fragments": 325, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Litorimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003316635.1", "gtdb_species": "s__Roseovarius dicentrarchi", "ani": 77.5973, "matched_fragments": 219, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseovarius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014901205.1", "gtdb_species": "s__Fluviibacterium sp014901205", "ani": 77.5539, "matched_fragments": 193, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Fluviibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014196965.1", "gtdb_species": "s__Actibacterium_A naphthalenivorans", "ani": 77.4465, "matched_fragments": 229, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Actibacterium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.28", "min_intra_species_ani": "97.38", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001458255.1", "gtdb_species": "s__Thalassobius autumnalis", "ani": 77.3649, "matched_fragments": 223, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Thalassobius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.93", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_016888515.1", "gtdb_species": "s__Shimia_A biformata", "ani": 77.2932, "matched_fragments": 263, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Shimia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014196795.1", "gtdb_species": "s__Sagittula marina", "ani": 77.283, "matched_fragments": 175, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sagittula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013377785.1", "gtdb_species": "s__Ruegeria haliotis", "ani": 77.2503, "matched_fragments": 144, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Ruegeria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018223085.1", "gtdb_species": "s__Shimia sp018223085", "ani": 77.1713, "matched_fragments": 220, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Shimia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002708925.1", "gtdb_species": "s__Thalassobius sp002708925", "ani": 77.1275, "matched_fragments": 234, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Thalassobius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003122245.1", "gtdb_species": "s__Roseovarius sp003122245", "ani": 77.1235, "matched_fragments": 211, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseovarius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018524345.1", "gtdb_species": "s__KMM-3653 sp018524345", "ani": 77.0944, "matched_fragments": 199, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__KMM-3653", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900188035.1", "gtdb_species": "s__Puniceibacterium sediminis", "ani": 77.0788, "matched_fragments": 172, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Puniceibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002282555.1", "gtdb_species": "s__EhC02 sp002282555", "ani": 77.0412, "matched_fragments": 133, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__EhC02", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018402175.1", "gtdb_species": "s__Yoonia sp018402175", "ani": 76.9935, "matched_fragments": 176, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Yoonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.02", "min_intra_species_ani": "95.02", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018222585.1", "gtdb_species": "s__Pseudooceanicola sp018222585", "ani": 76.8841, "matched_fragments": 204, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudooceanicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004959925.1", "gtdb_species": "s__Pseudooceanicola onchidii", "ani": 76.7915, "matched_fragments": 217, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudooceanicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003544895.1", "gtdb_species": "s__Profundibacter amoris", "ani": 76.7234, "matched_fragments": 208, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Profundibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013214575.1", "gtdb_species": "s__Parasedimentitalea sp013214575", "ani": 76.6779, "matched_fragments": 188, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Parasedimentitalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015494385.1", "gtdb_species": "s__Profundibacter sp015494385", "ani": 76.5422, "matched_fragments": 153, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Profundibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003688285.1", "gtdb_species": "s__Rhodophyticola porphyridii", "ani": 76.5309, "matched_fragments": 144, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodophyticola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Litorivita", "pollutaquae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }