{ "type": "genome", "identifier": "GCF_003206115.1", "organism": "Salinicola socius", "title": "Salinicola socius", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universidade de Aveiro", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003206115.1", "bioproject": "PRJNA224116", "biosample": "SAMN06299129", "wgs_master": "PZJS00000000.1", "refseq_category": "reference genome", "taxid": "404433", "species_taxid": "404433", "organism_name": "Salinicola socius", "infraspecific_name": "strain=DSM 19940", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/11", "asm_name": "ASM320611v1", "asm_submitter": "Universidade de Aveiro", "gbrs_paired_asm": "GCA_003206115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/206/115/GCF_003206115.1_ASM320611v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4090370", "genome_size_ungapped": "4089933", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003206115.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "3751", "protein_coding_gene_count": "3668", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-11", "dateModified": "2018-06-11", "datePublished": "2018-06-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Salinicola socius" ], "sample_taxid": [ "404433" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Berezniki, Perm 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95, "status": "conclusive" }, { "organism_name": "Salinicola socius", "strain": "strain=SMB35", "accession": "GCA_001937195.1", "taxid": 404433, "species_taxid": 404433, "relation_to_type": "type", "validated": true, "ani": 99.9833, "matched_fragments": 1328, "total_fragments": 1346, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Salinicola halophyticus", "strain": "strain=CR45", "accession": "GCA_003206695.1", "taxid": 1808881, "species_taxid": 1808881, "relation_to_type": "type", "validated": true, "ani": 86.6565, "matched_fragments": 1078, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola salarius", "strain": "strain=DSM 18044", "accession": "GCA_003206135.1", "taxid": 430457, "species_taxid": 430457, "relation_to_type": "type", "validated": true, "ani": 85.8217, "matched_fragments": 1025, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola 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