{ "type": "genome", "identifier": "GCF_003206155.1", "organism": "Salinicola halophilus", "title": "Salinicola halophilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universidade de Aveiro", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003206155.1", "bioproject": "PRJNA224116", "biosample": "SAMN06299115", "wgs_master": "PZJV00000000.1", "refseq_category": "reference genome", "taxid": "184065", "species_taxid": "184065", "organism_name": "Salinicola halophilus", "infraspecific_name": "strain=CECT 5903", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/11", "asm_name": "ASM320615v1", "asm_submitter": "Universidade de Aveiro", "gbrs_paired_asm": "GCA_003206155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/206/155/GCF_003206155.1_ASM320615v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3615108", "genome_size_ungapped": "3615031", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003206155.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3217", "protein_coding_gene_count": "3140", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-11", "dateModified": "2018-06-11", "datePublished": "2018-06-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Salinicola halophilus" ], "sample_taxid": [ "184065" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain: Cabo de Gata, Almeria" ], "sample_host_location_id": [], "data_size": "0.998 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3615108", "Number of Sequences": "14", "Longest Sequences (bp)": "1742936", "N50 (bp)": "659543", "Gap Ratio (%)": "0.003402", "GCcontent (%)": "64.9", "Number of CDSs": "3183", "Average Protein Length": "333.4", "Coding Ratio (%)": "88.1", "Number of rRNAs": "2", "Number of tRNAs": "65", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Salinicola halophilus", "strain": "strain=CECT 5903", "accession": "GCA_003206155.1", "taxid": 184065, "species_taxid": 184065, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1198, "total_fragments": 1198, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Salinicola aestuarinus", "strain": "strain=CPA62", "accession": "GCA_003206645.1", "taxid": 1949082, "species_taxid": 1949082, "relation_to_type": "type", "validated": true, "ani": 86.3063, "matched_fragments": 988, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola endophyticus", "strain": "strain=CPA92", "accession": "GCA_003206575.1", "taxid": 1949083, "species_taxid": 1949083, "relation_to_type": "type", "validated": true, "ani": 81.6399, "matched_fragments": 804, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola tamaricis", "strain": "strain=F01", "accession": "GCA_003006155.1", "taxid": 1771309, "species_taxid": 1771309, "relation_to_type": "type", "validated": true, "ani": 81.5003, "matched_fragments": 791, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola salarius", "strain": "strain=DSM 18044", "accession": "GCA_003206135.1", "taxid": 430457, "species_taxid": 430457, "relation_to_type": "type", "validated": true, "ani": 81.1355, "matched_fragments": 718, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola peritrichatus", "strain": "strain=JCM 18795", "accession": "GCA_003206715.1", "taxid": 1267424, "species_taxid": 1267424, "relation_to_type": "type", "validated": true, "ani": 81.0529, "matched_fragments": 737, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola lusitanus", "strain": "strain=CR50", "accession": "GCA_003206045.1", "taxid": 1949085, "species_taxid": 1949085, "relation_to_type": "type", "validated": true, "ani": 81.0469, "matched_fragments": 767, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola halophyticus", "strain": "strain=CR45", "accession": "GCA_003206695.1", "taxid": 1808881, "species_taxid": 1808881, "relation_to_type": "type", "validated": true, "ani": 80.7595, "matched_fragments": 749, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola rhizosphaerae", "strain": "strain=KCTC 32998", "accession": "GCA_014652715.1", "taxid": 1443141, "species_taxid": 1443141, "relation_to_type": "type", "validated": true, "ani": 80.5846, "matched_fragments": 730, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola socius", "strain": "strain=DSM 19940", "accession": "GCA_003206115.1", "taxid": 404433, "species_taxid": 404433, "relation_to_type": "type", "validated": true, "ani": 80.5442, "matched_fragments": 727, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola socius", "strain": "strain=SMB35", "accession": "GCA_001937195.1", "taxid": 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78.8652, "matched_fragments": 393, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas kenyensis", "strain": "strain=DSM 17331", "accession": "GCA_022341445.1", "taxid": 321266, "species_taxid": 321266, "relation_to_type": "type", "validated": true, "ani": 78.6427, "matched_fragments": 360, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003206155.1", "gtdb_species": "s__Salinicola halophilus", "ani": 100.0, "matched_fragments": 1198, "total_fragments": 1198, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Salinicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, 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