{ "type": "genome", "identifier": "GCF_003206615.1", "organism": "Salinicola acroporae", "title": "Salinicola acroporae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universidade de Aveiro", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003206615.1", "bioproject": "PRJNA224116", "biosample": "SAMN06299116", "wgs_master": "PZJW00000000.1", "refseq_category": "reference genome", "taxid": "1541440", "species_taxid": "1541440", "organism_name": "Salinicola acroporae", "infraspecific_name": "strain=LMG 28587", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/11", "asm_name": "ASM320661v1", "asm_submitter": "Universidade de Aveiro", "gbrs_paired_asm": "GCA_003206615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/206/615/GCF_003206615.1_ASM320661v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4372580", "genome_size_ungapped": "4372461", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003206615.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3999", "protein_coding_gene_count": "3916", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-11", "dateModified": "2018-06-11", "datePublished": "2018-06-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Salinicola acroporae" ], "sample_taxid": [ "1541440" ], "sample_host_organism": [ "Acropora digitifera" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: North Bay island, Andaman" ], "sample_host_location_id": [], "data_size": "1.218 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4372580", "Number of Sequences": "32", "Longest Sequences (bp)": "734116", "N50 (bp)": "303762", "Gap Ratio (%)": "0.003110", "GCcontent (%)": "63.7", "Number of CDSs": "3942", "Average Protein Length": "326.5", "Coding Ratio (%)": "88.3", "Number of rRNAs": "2", "Number of tRNAs": "63", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Salinicola acroporae", "strain": "strain=LMG 28587", "accession": "GCA_003206615.1", "taxid": 1541440, "species_taxid": 1541440, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1437, "total_fragments": 1440, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Salinicola lusitanus", "strain": "strain=CR50", "accession": "GCA_003206045.1", "taxid": 1949085, "species_taxid": 1949085, "relation_to_type": "type", "validated": true, "ani": 94.4429, "matched_fragments": 1298, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola salarius", "strain": "strain=DSM 18044", "accession": "GCA_003206135.1", "taxid": 430457, "species_taxid": 430457, "relation_to_type": "type", "validated": true, "ani": 84.6091, "matched_fragments": 1000, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola socius", "strain": "strain=DSM 19940", "accession": "GCA_003206115.1", "taxid": 404433, "species_taxid": 404433, "relation_to_type": "type", "validated": true, "ani": 84.2763, "matched_fragments": 1120, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola socius", "strain": "strain=SMB35", "accession": "GCA_001937195.1", "taxid": 404433, "species_taxid": 404433, "relation_to_type": "type", "validated": true, "ani": 84.265, "matched_fragments": 1093, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola halophyticus", "strain": "strain=CR45", "accession": "GCA_003206695.1", "taxid": 1808881, "species_taxid": 1808881, "relation_to_type": "type", "validated": true, "ani": 83.749, "matched_fragments": 1034, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola endophyticus", "strain": "strain=CPA92", "accession": "GCA_003206575.1", "taxid": 1949083, "species_taxid": 1949083, "relation_to_type": "type", "validated": true, "ani": 83.2263, "matched_fragments": 939, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola halimionae", "strain": "strain=CPA60", "accession": "GCA_003206065.1", "taxid": 1949081, "species_taxid": 1949081, "relation_to_type": "type", "validated": true, "ani": 83.0014, "matched_fragments": 1019, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola peritrichatus", "strain": "strain=JCM 18795", "accession": "GCA_003206715.1", "taxid": 1267424, "species_taxid": 1267424, "relation_to_type": "type", "validated": true, "ani": 82.3481, "matched_fragments": 907, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 79.1138, "matched_fragments": 454, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ethanolica", "strain": "strain=MCCC 1A11081", "accession": "GCA_021404305.1", "taxid": 2733486, "species_taxid": 2733486, "relation_to_type": "type", "validated": true, "ani": 79.0516, "matched_fragments": 434, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas tianxiuensis", "strain": "strain=BC-M4-5", "accession": "GCA_009834345.1", "taxid": 2497861, "species_taxid": 2497861, "relation_to_type": "type", "validated": true, "ani": 78.8399, "matched_fragments": 433, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas zhangzhouensis", "strain": "strain=MCCC 1A11036", "accession": "GCA_021404465.1", "taxid": 2733481, "species_taxid": 2733481, "relation_to_type": "type", "validated": true, "ani": 78.6336, "matched_fragments": 403, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lysinitropha", "strain": "strain=3(2)", "accession": "GCA_902500215.1", "taxid": 2607506, 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