{ "type": "genome", "identifier": "GCF_003206645.1", "organism": "Salinicola aestuarinus", "title": "Salinicola aestuarinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universidade de Aveiro", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003206645.1", "bioproject": "PRJNA224116", "biosample": "SAMN06299277", "wgs_master": "PZJP00000000.1", "refseq_category": "reference genome", "taxid": "1949082", "species_taxid": "1949082", "organism_name": "Salinicola aestuarinus", "infraspecific_name": "strain=CPA62", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/11", "asm_name": "ASM320664v1", "asm_submitter": "Universidade de Aveiro", "gbrs_paired_asm": "GCA_003206645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/206/645/GCF_003206645.1_ASM320664v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3869882", "genome_size_ungapped": "3869781", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003206645.1-RS_2024_04_30", "annotation_date": "2024-04-30", "total_gene_count": "3491", "protein_coding_gene_count": "3407", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-11", "dateModified": "2018-06-11", "datePublished": "2018-06-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Salinicola aestuarinus" ], "sample_taxid": [ "1949082" ], "sample_host_organism": [ "Atriplex portulacoides" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Portugal: Ria de Aveiro, Aveiro" ], "sample_host_location_id": [], "data_size": "1.078 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3869882", "Number of Sequences": "33", "Longest Sequences (bp)": "958676", "N50 (bp)": "480424", "Gap Ratio (%)": "0.004083", "GCcontent (%)": "63.6", "Number of CDSs": "3435", "Average Protein Length": "328.5", "Coding Ratio (%)": "87.5", "Number of rRNAs": "3", "Number of tRNAs": "68", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Salinicola aestuarinus", "strain": "strain=CPA62", "accession": "GCA_003206645.1", "taxid": 1949082, "species_taxid": 1949082, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1272, 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"below_threshold" }, { "organism_name": "Salinicola lusitanus", "strain": "strain=CR50", "accession": "GCA_003206045.1", "taxid": 1949085, "species_taxid": 1949085, "relation_to_type": "type", "validated": true, "ani": 80.6929, "matched_fragments": 736, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola salarius", "strain": "strain=DSM 18044", "accession": "GCA_003206135.1", "taxid": 430457, "species_taxid": 430457, "relation_to_type": "type", "validated": true, "ani": 80.6811, "matched_fragments": 686, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola acroporae", "strain": "strain=LMG 28587", "accession": "GCA_003206615.1", "taxid": 1541440, "species_taxid": 1541440, "relation_to_type": "type", "validated": true, "ani": 80.4828, "matched_fragments": 723, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola peritrichatus", "strain": "strain=JCM 18795", "accession": "GCA_003206715.1", "taxid": 1267424, "species_taxid": 1267424, "relation_to_type": "type", "validated": true, "ani": 80.4602, "matched_fragments": 690, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola rhizosphaerae", "strain": "strain=KCTC 32998", "accession": "GCA_014652715.1", "taxid": 1443141, "species_taxid": 1443141, "relation_to_type": "type", "validated": true, "ani": 80.2614, "matched_fragments": 711, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola socius", "strain": "strain=DSM 19940", "accession": "GCA_003206115.1", "taxid": 404433, "species_taxid": 404433, "relation_to_type": "type", "validated": true, "ani": 80.1453, "matched_fragments": 722, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", 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