{ "type": "genome", "identifier": "GCF_003207795.1", "organism": "Komagataeibacter nataicola", "title": "Komagataeibacter nataicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Faculty of Natural Sciences and Mathematics", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003207795.1", "bioproject": "PRJNA224116", "biosample": "SAMN07196565", "wgs_master": "NIRT00000000.1", "refseq_category": "na", "taxid": "265960", "species_taxid": "265960", "organism_name": "Komagataeibacter nataicola", "infraspecific_name": "strain=LMG 1536", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/11", "asm_name": "ASM320779v1", "asm_submitter": "Faculty of Natural Sciences and Mathematics", "gbrs_paired_asm": "GCA_003207795.1", "paired_asm_comp": "identical", "ftp_path": 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"sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Philippines" ], "sample_host_location_id": [], "data_size": "1.031 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3672972", "Number of Sequences": "106", "Longest Sequences (bp)": "291385", "N50 (bp)": "107486", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.5", "Number of CDSs": "3498", "Average Protein Length": "300.2", "Coding Ratio (%)": "85.8", "Number of rRNAs": "2", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Komagataeibacter nataicola", "strain": "strain=LMG 1536", "accession": "GCA_003207795.1", "taxid": 265960, "species_taxid": 265960, 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"matched_fragments": 163, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium iwatense", "strain": "strain=KCTC 23505", "accession": "GCA_021556475.1", "taxid": 768198, "species_taxid": 768198, "relation_to_type": "type", "validated": true, "ani": 76.5719, "matched_fragments": 105, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovarius crocodyli", "strain": "strain=CCP-6", "accession": "GCA_004005855.1", "taxid": 1979269, "species_taxid": 1979269, "relation_to_type": "type", "validated": true, "ani": 76.3782, "matched_fragments": 165, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum cavernae", "strain": "strain=K2W22B-5", "accession": "GCA_003590795.1", "taxid": 2320860, "species_taxid": 2320860, "relation_to_type": "type", "validated": true, "ani": 75.9151, "matched_fragments": 110, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003207795.1", "gtdb_species": "s__Komagataeibacter nataicola", "ani": 100.0, "matched_fragments": 1162, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.90", "min_intra_species_ani": "99.90", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_003207865.1", "gtdb_species": "s__Komagataeibacter sucrofermentans", "ani": 93.1511, "matched_fragments": 945, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter", "ani_circumscription_radius": 95.0, 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"mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001571345.1", "gtdb_species": "s__Komagataeibacter xylinus", "ani": 92.4042, "matched_fragments": 916, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.56", "min_intra_species_ani": "99.15", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_013155395.1", "gtdb_species": "s__Komagataeibacter melomenusus", "ani": 92.392, "matched_fragments": 887, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter", "ani_circumscription_radius": 95.0, 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"\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }