{ "type": "genome", "identifier": "GCF_003207855.1", "organism": "Komagataeibacter rhaeticus", "title": "Komagataeibacter rhaeticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Faculty of Natural Sciences and Mathematics", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003207855.1", "bioproject": "PRJNA224116", "biosample": "SAMN07311658", "wgs_master": "NKTZ00000000.1", "refseq_category": "na", "taxid": "215221", "species_taxid": "215221", "organism_name": "Komagataeibacter rhaeticus", "infraspecific_name": "strain=LMG 22126", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/11", "asm_name": "ASM320785v1", "asm_submitter": "Faculty of Natural Sciences and Mathematics", "gbrs_paired_asm": "GCA_003207855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/207/855/GCF_003207855.1_ASM320785v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3465200", "genome_size_ungapped": "3465200", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "64", "contig_count": "64", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003207855.1-RS_2024_12_15", "annotation_date": "2024-12-15", "total_gene_count": "3209", "protein_coding_gene_count": "3073", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-11", "dateModified": "2018-06-11", "datePublished": "2018-06-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Komagataeibacter rhaeticus" ], "sample_taxid": [ "215221" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy:Val Venosta, South Tyrol" ], "sample_host_location_id": [], "data_size": "0.961 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3465200", "Number of Sequences": "64", "Longest Sequences (bp)": "459256", "N50 (bp)": "207167", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.5", "Number of CDSs": "3127", "Average Protein Length": "322.5", "Coding Ratio (%)": "87.3", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Komagataeibacter rhaeticus", "strain": "strain=LMG 22126", "accession": "GCA_003207855.1", "taxid": 215221, 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"type", "validated": true, "ani": 85.2901, "matched_fragments": 774, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter nataicola", "strain": "strain=LMG 1536", "accession": "GCA_003207795.1", "taxid": 265960, "species_taxid": 265960, "relation_to_type": "type", "validated": true, "ani": 85.2752, "matched_fragments": 773, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter intermedius", "strain": "strain=TF2", "accession": "GCA_000964425.1", "taxid": 66229, "species_taxid": 66229, "relation_to_type": "type", "validated": true, "ani": 85.1428, "matched_fragments": 795, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter diospyri", "strain": "strain=MSKU 9", "accession": "GCA_006538165.1", "taxid": 1932662, "species_taxid": 1932662, "relation_to_type": "type", "validated": true, "ani": 84.8081, "matched_fragments": 793, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter kakiaceti", "strain": "strain=JCM 25156", "accession": "GCA_000613305.1", "taxid": 943261, "species_taxid": 943261, "relation_to_type": "type", "validated": true, "ani": 84.3117, "matched_fragments": 347, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter saccharivorans", "strain": "strain=LMG 1582", "accession": "GCA_003207825.1", "taxid": 265959, "species_taxid": 265959, "relation_to_type": "type", "validated": true, "ani": 84.0747, "matched_fragments": 722, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter garciniae", "strain": "strain=TBRC 12339", "accession": "GCA_017377735.1", "taxid": 2817435, "species_taxid": 2817435, "relation_to_type": "type", "validated": true, "ani": 79.2381, "matched_fragments": 358, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium iwatense", "strain": "strain=KCTC 23505", "accession": "GCA_021556475.1", "taxid": 768198, "species_taxid": 768198, "relation_to_type": "type", "validated": true, "ani": 76.232, "matched_fragments": 115, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoligotrophos defluvii", "strain": "strain=lm1", "accession": "GCA_005281615.1", "taxid": 2561934, "species_taxid": 2561934, "relation_to_type": "type", "validated": true, "ani": 76.1338, "matched_fragments": 52, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium elkanii", "strain": "strain=USDA 76", "accession": "GCA_023278185.1", "taxid": 29448, "species_taxid": 29448, "relation_to_type": "type", "validated": true, "ani": 75.9747, "matched_fragments": 73, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hoeflea alexandrii", "strain": "strain=DSM 16655", "accession": "GCA_024105735.1", "taxid": 288436, "species_taxid": 288436, "relation_to_type": "type", "validated": true, "ani": 75.9746, "matched_fragments": 54, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003207855.1", "gtdb_species": "s__Komagataeibacter rhaeticus", "ani": 100.0, "matched_fragments": 1127, "total_fragments": 1127, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.08", "min_intra_species_ani": "98.72", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 8, "status": "conclusive" }, { "accession": "GCF_000182745.2", "gtdb_species": 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