{ "type": "genome", "identifier": "GCF_003208175.1", "organism": "Ruminiclostridium sufflavum DSM 19573", "title": "Ruminiclostridium sufflavum DSM 19573", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003208175.1", "bioproject": "PRJNA224116", "biosample": "SAMN05660363", "wgs_master": "QKMR00000000.1", "refseq_category": "reference genome", "taxid": "1121337", "species_taxid": "396504", "organism_name": "Ruminiclostridium sufflavum DSM 19573", "infraspecific_name": "strain=DSM 19573", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/12", "asm_name": "ASM320817v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003208175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/208/175/GCF_003208175.1_ASM320817v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4401411", "genome_size_ungapped": "4392147", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "57", "contig_count": "57", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003208175.1-RS_2024_04_07", "annotation_date": "2024-04-07", "total_gene_count": "3767", "protein_coding_gene_count": "3654", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-12", "dateModified": "2018-06-12", "datePublished": "2018-06-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Ruminiclostridium sufflavum DSM 19573" ], "sample_taxid": [ "1121337" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.236 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4401411", "Number of Sequences": "57", "Longest Sequences (bp)": "355614", "N50 (bp)": "172915", "Gap Ratio (%)": "0.210478", "GCcontent (%)": "38.7", "Number of CDSs": "3685", "Average Protein Length": "337.1", "Coding Ratio (%)": "84.7", "Number of rRNAs": "5", "Number of tRNAs": "52", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ruminiclostridium sufflavum", "strain": "strain=DSM 19573", "accession": "GCA_003208175.1", "taxid": 396504, "species_taxid": 396504, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1431, "total_fragments": 1433, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Ruminiclostridium herbifermentans", "strain": "strain=MA18", "accession": "GCA_005473905.2", "taxid": 2488810, "species_taxid": 2488810, "relation_to_type": "type", "validated": true, "ani": 79.1316, "matched_fragments": 546, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruminiclostridium papyrosolvens", "strain": "strain=DSM 2782", "accession": "GCA_000175795.2", "taxid": 29362, "species_taxid": 29362, "relation_to_type": "type", "validated": true, "ani": 77.5203, "matched_fragments": 192, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruminiclostridium josui", "strain": "strain=JCM 17888", "accession": "GCA_000526495.1", "taxid": 1499, "species_taxid": 1499, "relation_to_type": "type", "validated": true, "ani": 77.4889, "matched_fragments": 188, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruminiclostridium cellulolyticum", "strain": "strain=H10; 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