{
    "type": "genome",
    "identifier": "GCF_003208215.1",
    "organism": "Marinomonas alcarazii",
    "title": "Marinomonas alcarazii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003208215.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09077293",
        "wgs_master": "QKLW00000000.1",
        "refseq_category": "reference genome",
        "taxid": "491949",
        "species_taxid": "491949",
        "organism_name": "Marinomonas alcarazii",
        "infraspecific_name": "strain=CECT 7730",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/06/12",
        "asm_name": "ASM320821v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_003208215.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/208/215/GCF_003208215.1_ASM320821v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3969578",
        "genome_size_ungapped": "3969095",
        "gc_percent": "44.000000",
        "replicon_count": "0",
        "scaffold_count": "21",
        "contig_count": "21",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003208215.1-RS_2024_05_04",
        "annotation_date": "2024-05-04",
        "total_gene_count": "3657",
        "protein_coding_gene_count": "3564",
        "non_coding_gene_count": "74",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-06-12",
    "dateModified": "2018-06-12",
    "datePublished": "2018-06-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Marinomonas alcarazii"
        ],
        "sample_taxid": [
            "491949"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.131 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3969578",
        "Number of Sequences": "21",
        "Longest Sequences (bp)": "1083057",
        "N50 (bp)": "352745",
        "Gap Ratio (%)": "0.012495",
        "GCcontent (%)": "43.8",
        "Number of CDSs": "3568",
        "Average Protein Length": "327.6",
        "Coding Ratio (%)": "88.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "65",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Marinomonas alcarazii",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Marinomonas foliarum",
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                "species_taxid": 491950,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1013,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinomonas lutimaris",
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                "species_taxid": 2846746,
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            },
            {
                "organism_name": "Marinomonas polaris",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinomonas rhizomae",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinomonas rhizomae",
                "strain": "strain=IVIA-Po-145",
                "accession": "GCA_003721275.1",
                "taxid": 491948,
                "species_taxid": 491948,
                "relation_to_type": "type",
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                "matched_fragments": 807,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinomonas shanghaiensis",
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                "accession": "GCA_003259175.1",
                "taxid": 2202418,
                "species_taxid": 2202418,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1231,
                "matched_fragments": 772,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinomonas profundi",
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                "accession": "GCA_012584435.1",
                "taxid": 2726122,
                "species_taxid": 2726122,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinomonas primoryensis",
                "strain": "strain=MPKMM3633",
                "accession": "GCA_013372285.1",
                "taxid": 178399,
                "species_taxid": 178399,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1416,
                "matched_fragments": 652,
                "total_fragments": 1313,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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            {
                "accession": "GCF_003208215.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Marinomonadaceae;g__Marinomonas",
                "ani_circumscription_radius": 95.0,
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                "accession": "GCF_003337275.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.18",
                "min_intra_species_ani": "98.18",
                "mean_intra_species_af": "0.87",
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                "num_clustered_genomes": 2,
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            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}