{ "type": "genome", "identifier": "GCF_003217215.1", "organism": "Winogradskyella epiphytica", "title": "Winogradskyella epiphytica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003217215.1", "bioproject": "PRJNA224116", "biosample": "SAMN09074750", "wgs_master": "QJTD00000000.1", "refseq_category": "reference genome", "taxid": "262005", "species_taxid": "262005", "organism_name": "Winogradskyella epiphytica", "infraspecific_name": "strain=CECT 7945", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/12", "asm_name": "ASM321721v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003217215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/217/215/GCF_003217215.1_ASM321721v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3378934", "genome_size_ungapped": "3377951", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "47", "contig_count": "47", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003217215.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3023", "protein_coding_gene_count": "2966", "non_coding_gene_count": "43", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-12", "dateModified": "2018-06-12", "datePublished": "2018-06-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Winogradskyella epiphytica" ], "sample_taxid": [ "262005" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.947 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3378934", "Number of Sequences": "47", "Longest Sequences (bp)": "1218875", "N50 (bp)": "838243", "Gap Ratio (%)": "0.029092", "GCcontent (%)": "34.2", "Number of CDSs": "2975", "Average Protein Length": "331.9", "Coding Ratio (%)": "87.7", "Number of rRNAs": "3", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Winogradskyella epiphytica", "strain": "strain=CECT 7945", "accession": "GCA_003217215.1", "taxid": 262005, "species_taxid": 262005, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1099, 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"status": "below_threshold" }, { "organism_name": "Winogradskyella marina", "strain": "strain=F6397", "accession": "GCA_015645385.1", "taxid": 2785530, "species_taxid": 2785530, "relation_to_type": "type", "validated": true, "ani": 79.3899, "matched_fragments": 552, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ludwigii", "strain": "strain=HL116", "accession": "GCA_013403985.1", "taxid": 2686076, "species_taxid": 2686076, "relation_to_type": "type", "validated": true, "ani": 79.3749, "matched_fragments": 525, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella costae", "strain": "strain=Z3138", "accession": "GCA_013403865.1", "taxid": 2697008, "species_taxid": 2697008, "relation_to_type": "type", "validated": true, "ani": 79.3398, "matched_fragments": 506, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella sediminis", "strain": "strain=DSM 28134", "accession": "GCA_003387355.1", "taxid": 1382466, "species_taxid": 1382466, "relation_to_type": "type", "validated": true, "ani": 79.3175, "matched_fragments": 518, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella litoriviva", "strain": "strain=KMM6491", "accession": "GCA_013249065.1", "taxid": 1220182, "species_taxid": 1220182, "relation_to_type": "type", "validated": true, "ani": 79.2, "matched_fragments": 484, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella undariae", "strain": "strain=CCUG 63832", "accession": "GCA_013285155.1", "taxid": 1285465, "species_taxid": 1285465, "relation_to_type": "type", "validated": true, "ani": 79.1853, "matched_fragments": 522, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella vidalii", "strain": "strain=HL634", "accession": "GCA_013403955.1", "taxid": 2615024, "species_taxid": 2615024, "relation_to_type": "type", "validated": true, "ani": 79.175, "matched_fragments": 507, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella algicola", "strain": "strain=IMCC33238", "accession": "GCA_005869935.1", "taxid": 2575815, "species_taxid": 2575815, "relation_to_type": "type", "validated": true, "ani": 78.1009, "matched_fragments": 348, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ouciana", "strain": "strain=ZXX205", "accession": "GCA_009709615.1", "taxid": 2608631, "species_taxid": 2608631, "relation_to_type": "type", "validated": true, "ani": 77.9904, "matched_fragments": 357, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olleya marilimosa", "strain": "strain=CAM030", "accession": "GCA_000518485.1", "taxid": 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