{ "type": "genome", "identifier": "GCF_003217495.1", "organism": "Paenibacillus barcinonensis", "title": "Paenibacillus barcinonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003217495.1", "bioproject": "PRJNA224116", "biosample": "SAMN09074971", "wgs_master": "QJSW00000000.1", "refseq_category": "na", "taxid": "198119", "species_taxid": "198119", "organism_name": "Paenibacillus barcinonensis", "infraspecific_name": "strain=CECT 7022", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/12", "asm_name": "ASM321749v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003217495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/217/495/GCF_003217495.1_ASM321749v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6261136", "genome_size_ungapped": "6259714", "gc_percent": "47.000000", "replicon_count": "0", "scaffold_count": "71", "contig_count": "71", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003217495.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "5770", "protein_coding_gene_count": "5577", "non_coding_gene_count": "122", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-12", "dateModified": "2018-06-12", "datePublished": "2018-06-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus barcinonensis" ], "sample_taxid": [ "198119" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus amylolyticus", "strain": "strain=NBRC 15957", "accession": "GCA_004001025.1", "taxid": 1451, "species_taxid": 1451, "relation_to_type": "suspected-type", "validated": true, "ani": 81.3781, "matched_fragments": 1140, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus xylanivorans", "strain": "strain=A59", "accession": "GCA_001280595.1", "taxid": 1705561, "species_taxid": 1705561, "relation_to_type": "type", "validated": true, "ani": 81.0152, "matched_fragments": 944, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus pabuli", "strain": "strain=NBRC 13638", "accession": "GCA_001514495.1", "taxid": 1472, "species_taxid": 1472, "relation_to_type": "suspected-type", "validated": true, "ani": 81.0127, "matched_fragments": 950, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus xylanilyticus", "strain": "strain=LMG 21957", "accession": "GCA_013359935.1", "taxid": 248903, "species_taxid": 248903, "relation_to_type": "type", "validated": true, "ani": 80.9957, "matched_fragments": 888, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus illinoisensis", "strain": "strain=NBRC 15959", "accession": "GCA_004000925.1", "taxid": 59845, "species_taxid": 59845, "relation_to_type": "type", "validated": true, "ani": 80.8825, "matched_fragments": 889, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus etheri", "strain": "strain=SH7", "accession": "GCA_001012825.2", "taxid": 1306852, "species_taxid": 1306852, "relation_to_type": "type", "validated": true, "ani": 77.2867, "matched_fragments": 117, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus algicola", "strain": "strain=HB172198", "accession": "GCA_005577435.1", "taxid": 2565926, "species_taxid": 2565926, "relation_to_type": "type", "validated": true, "ani": 77.2367, "matched_fragments": 127, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus roseus", "strain": "strain=MAHUQ-46", "accession": "GCA_016424485.1", "taxid": 2798579, "species_taxid": 2798579, "relation_to_type": "type", "validated": true, "ani": 76.9372, "matched_fragments": 71, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus rhizophilus", "strain": "strain=7197", "accession": "GCA_003854965.1", "taxid": 1850366, "species_taxid": 1850366, "relation_to_type": "type", "validated": true, "ani": 76.8908, "matched_fragments": 120, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus frigoriresistens", "strain": "strain=LMG 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59842, "species_taxid": 59842, "relation_to_type": "type", "validated": true, "ani": 76.1053, "matched_fragments": 51, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003217495.1", "gtdb_species": "s__Paenibacillus barcinonensis", "ani": 100.0, "matched_fragments": 2051, "total_fragments": 2052, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_014639235.1", "gtdb_species": "s__Paenibacillus silvae", "ani": 89.9087, "matched_fragments": 1740, "total_fragments": 2052, "gtdb_taxonomy": 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