{
    "type": "genome",
    "identifier": "GCF_003217555.1",
    "organism": "Aneurinibacillus soli",
    "title": "Aneurinibacillus soli",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003217555.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09074743",
        "wgs_master": "QJSZ00000000.1",
        "refseq_category": "na",
        "taxid": "1500254",
        "species_taxid": "1500254",
        "organism_name": "Aneurinibacillus soli",
        "infraspecific_name": "strain=CECT 8566",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/06/12",
        "asm_name": "ASM321755v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_003217555.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/217/555/GCF_003217555.1_ASM321755v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4020581",
        "genome_size_ungapped": "4019512",
        "gc_percent": "46.000000",
        "replicon_count": "0",
        "scaffold_count": "44",
        "contig_count": "44",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003217555.1-RS_2024_09_08",
        "annotation_date": "2024-09-08",
        "total_gene_count": "4155",
        "protein_coding_gene_count": "3905",
        "non_coding_gene_count": "186",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-06-12",
    "dateModified": "2018-06-12",
    "datePublished": "2018-06-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aneurinibacillus soli"
        ],
        "sample_taxid": [
            "1500254"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.150 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4020581",
        "Number of Sequences": "44",
        "Longest Sequences (bp)": "417169",
        "N50 (bp)": "178282",
        "Gap Ratio (%)": "0.026588",
        "GCcontent (%)": "45.8",
        "Number of CDSs": "3944",
        "Average Protein Length": "292.5",
        "Coding Ratio (%)": "86.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "148",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Aneurinibacillus soli",
                "strain": "strain=CECT 8566",
                "accession": "GCA_003217555.1",
                "taxid": 1500254,
                "species_taxid": 1500254,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1313,
                "total_fragments": 1319,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aneurinibacillus soli",
                "strain": "strain=CB4",
                "accession": "GCA_002355375.1",
                "taxid": 1500254,
                "species_taxid": 1500254,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.996,
                "matched_fragments": 1319,
                "total_fragments": 1319,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aneurinibacillus migulanus",
                "strain": "strain=NCTC 7096",
                "accession": "GCA_000878905.1",
                "taxid": 47500,
                "species_taxid": 47500,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1167,
                "matched_fragments": 199,
                "total_fragments": 1319,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aneurinibacillus migulanus",
                "strain": "strain=NBRC 15520",
                "accession": "GCA_006539965.1",
                "taxid": 47500,
                "species_taxid": 47500,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8931,
                "matched_fragments": 189,
                "total_fragments": 1319,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aneurinibacillus thermoaerophilus",
                "strain": "strain=L 420-91",
                "accession": "GCA_900099925.1",
                "taxid": 143495,
                "species_taxid": 143495,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3278,
                "matched_fragments": 168,
                "total_fragments": 1319,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevibacillus brevis",
                "strain": "strain=NRRL NRS-604",
                "accession": "GCA_003012835.1",
                "taxid": 1393,
                "species_taxid": 1393,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.5733,
                "matched_fragments": 50,
                "total_fragments": 1319,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002355375.1",
                "gtdb_species": "s__Aneurinibacillus soli",
                "ani": 99.996,
                "matched_fragments": 1319,
                "total_fragments": 1319,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Aneurinibacillales;f__Aneurinibacillaceae;g__Aneurinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001274715.1",
                "gtdb_species": "s__Aneurinibacillus migulanus",
                "ani": 78.0542,
                "matched_fragments": 198,
                "total_fragments": 1319,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Aneurinibacillales;f__Aneurinibacillaceae;g__Aneurinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.46",
                "min_intra_species_ani": "98.76",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_007991215.1",
                "gtdb_species": "s__Aneurinibacillus danicus",
                "ani": 77.4932,
                "matched_fragments": 188,
                "total_fragments": 1319,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Aneurinibacillales;f__Aneurinibacillaceae;g__Aneurinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.16",
                "min_intra_species_ani": "99.16",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900099925.1",
                "gtdb_species": "s__Aneurinibacillus thermoaerophilus",
                "ani": 77.3278,
                "matched_fragments": 168,
                "total_fragments": 1319,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Aneurinibacillales;f__Aneurinibacillaceae;g__Aneurinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.68",
                "min_intra_species_ani": "99.68",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900637055.1",
                "gtdb_species": "s__Brevibacillus brevis",
                "ani": 76.8693,
                "matched_fragments": 50,
                "total_fragments": 1319,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.71",
                "min_intra_species_ani": "98.86",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.065,
        "cell_length": 0.481,
        "doubling_h": null,
        "growth_tmp": 37.9,
        "optimum_tmp": 35.5,
        "optimum_ph": 6.25,
        "genome_size": 4116770.0,
        "gc_content": 45.9,
        "coding_genes": 3859.0,
        "rRNA16S_genes": 17.0,
        "tRNA_genes": 169.0,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.666,
        "thermophilic_range_tmp": 0.333,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Aneurinibacillus",
        "soli"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}