{ "type": "genome", "identifier": "GCF_003219815.1", "organism": "Arthrobacter livingstonensis", "title": "Arthrobacter livingstonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbiology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003219815.1", "bioproject": "PRJNA224116", "biosample": "SAMN08046643", "wgs_master": "QJVD00000000.1", "refseq_category": "reference genome", "taxid": "670078", "species_taxid": "670078", "organism_name": "Arthrobacter livingstonensis", "infraspecific_name": "strain=LI2", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/12", "asm_name": "ASM321981v1", "asm_submitter": "Institute of Microbiology, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_003219815.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/219/815/GCF_003219815.1_ASM321981v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5042614", "genome_size_ungapped": "5042342", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "116", "contig_count": "116", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003219815.1-RS_2024_08_01", "annotation_date": "2024-08-01", "total_gene_count": "4633", "protein_coding_gene_count": "4476", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-12", "dateModified": "2018-06-12", "datePublished": "2018-06-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Arthrobacter livingstonensis" ], "sample_taxid": [ "670078" ], "sample_host_organism": [], 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}, { "organism_name": "Pseudarthrobacter enclensis", "strain": "strain=NIO-1008", "accession": "GCA_001457025.1", "taxid": 993070, "species_taxid": 993070, "relation_to_type": "type", "validated": true, "ani": 78.7728, "matched_fragments": 423, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sedimenti", "strain": "strain=MIC A30", "accession": "GCA_011750795.2", "taxid": 2694931, "species_taxid": 2694931, "relation_to_type": "type", "validated": true, "ani": 78.5015, "matched_fragments": 309, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_018866305.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 78.4154, "matched_fragments": 312, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", 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"mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_013376105.1", "gtdb_species": "s__Specibacter sp013376105", "ani": 84.7303, "matched_fragments": 1028, "total_fragments": 1630, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Specibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003268655.1", "gtdb_species": "s__Specibacter dokdonellae", "ani": 84.5659, "matched_fragments": 1013, "total_fragments": 1630, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Specibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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"-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.105, "cell_length": 0.019, "doubling_h": null, "growth_tmp": 16.0, "optimum_tmp": 26.833, "optimum_ph": 7.7, "genome_size": 4207472.204, "gc_content": 64.7, "coding_genes": 3997.0, "rRNA16S_genes": 7.0, "tRNA_genes": 50.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.235, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.03, "aerobic_respiration": 0.969, "mesophilic_range_tmp": 0.8, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.2, "bacillus_cell_shape": 0.466, "coccus_cell_shape": 0.333, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.2, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Arthrobacter", "livingstonensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }