{ "type": "genome", "identifier": "GCF_003226255.1", "organism": "Idiomarina fontislapidosi", "title": "Idiomarina fontislapidosi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003226255.1", "bioproject": "PRJNA224116", "biosample": "SAMN09074960", "wgs_master": "QJST00000000.1", "refseq_category": "reference genome", "taxid": "263723", "species_taxid": "263723", "organism_name": "Idiomarina fontislapidosi", "infraspecific_name": "strain=CECT 5859", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/12", "asm_name": "ASM322625v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003226255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/226/255/GCF_003226255.1_ASM322625v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2862757", "genome_size_ungapped": "2861170", "gc_percent": "48.000000", "replicon_count": "0", "scaffold_count": "45", "contig_count": "45", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003226255.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "2686", "protein_coding_gene_count": "2612", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-12", "dateModified": "2018-06-12", "datePublished": "2018-06-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Idiomarina fontislapidosi" ], "sample_taxid": [ "263723" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.821 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2862757", "Number of Sequences": "45", "Longest Sequences (bp)": "519466", "N50 (bp)": "165901", "Gap Ratio (%)": "0.055436", "GCcontent (%)": "47.8", "Number of CDSs": "2612", "Average Protein Length": "337.5", "Coding Ratio (%)": "92.4", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Idiomarina fontislapidosi", "strain": "strain=CECT 5859", "accession": "GCA_003226255.1", "taxid": 263723, "species_taxid": 263723, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 929, "total_fragments": 931, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Idiomarina fontislapidosi", "strain": "strain=F23", "accession": "GCA_003987025.1", "taxid": 263723, "species_taxid": 263723, "relation_to_type": "type", "validated": true, "ani": 99.9955, "matched_fragments": 930, "total_fragments": 931, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Idiomarina baltica", "strain": "strain=OS145", "accession": "GCA_000152885.1", "taxid": 190892, "species_taxid": 190892, "relation_to_type": "type", "validated": true, "ani": 83.6368, "matched_fragments": 613, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina piscisalsi", "strain": "strain=TPS4-2", "accession": "GCA_003987095.1", "taxid": 1096243, "species_taxid": 1096243, "relation_to_type": "type", "validated": true, "ani": 78.6346, "matched_fragments": 125, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina abyssalis", "strain": "strain=KMM 227", "accession": "GCA_001294685.1", "taxid": 86102, "species_taxid": 86102, "relation_to_type": "type", "validated": true, "ani": 78.4552, "matched_fragments": 127, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina seosinensis", "strain": "strain=CL-SP19", "accession": "GCA_003987275.1", "taxid": 281739, "species_taxid": 281739, "relation_to_type": "type", "validated": true, "ani": 78.4165, "matched_fragments": 150, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina abyssalis", "strain": "strain=KMM 227", "accession": "GCA_900116625.1", "taxid": 86102, "species_taxid": 86102, "relation_to_type": "type", "validated": true, "ani": 78.2963, "matched_fragments": 127, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina tyrosinivorans", "strain": "strain=CC-PW-9", "accession": "GCA_003987475.1", "taxid": 1445662, "species_taxid": 1445662, "relation_to_type": "type", "validated": true, "ani": 78.28, "matched_fragments": 108, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudidiomarina marina", "strain": "strain=PIM1", "accession": "GCA_003987045.1", "taxid": 502366, "species_taxid": 502366, "relation_to_type": "type", "validated": true, "ani": 78.0912, "matched_fragments": 84, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003226255.1", "gtdb_species": "s__Idiomarina fontislapidosi", "ani": 100.0, "matched_fragments": 929, "total_fragments": 931, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Idiomarina", "ani_circumscription_radius": 95.0, 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"97.61", "min_intra_species_ani": "97.37", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.80", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003987095.1", "gtdb_species": "s__Idiomarina piscisalsi", "ani": 78.6346, "matched_fragments": 125, "total_fragments": 931, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Idiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003987275.1", "gtdb_species": "s__Idiomarina seosinensis", "ani": 78.4394, "matched_fragments": 148, "total_fragments": 931, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Idiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": 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