{ "type": "genome", "identifier": "GCF_003236295.1", "organism": "Jiangella anatolica", "title": "Jiangella anatolica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ondokuz Mayis University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003236295.1", "bioproject": "PRJNA224116", "biosample": "SAMN08329047", "wgs_master": "POTW00000000.1", "refseq_category": "reference genome", "taxid": "2670374", "species_taxid": "2670374", "organism_name": "Jiangella anatolica", "infraspecific_name": "strain=GTF31", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/18", "asm_name": "ASM323629v1", "asm_submitter": "Ondokuz Mayis University", "gbrs_paired_asm": "GCA_003236295.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/236/295/GCF_003236295.1_ASM323629v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7005973", "genome_size_ungapped": "7005973", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "256", "contig_count": "256", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003236295.1-RS_2024_08_05", "annotation_date": "2024-08-05", "total_gene_count": "6705", "protein_coding_gene_count": "6528", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-18", "dateModified": "2018-06-18", "datePublished": "2018-06-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Jiangella anatolica" ], "sample_taxid": [ "2670374" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Turkey:Isparta" ], "sample_host_location_id": [], "data_size": "1.856 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7005973", "Number of Sequences": "256", "Longest Sequences (bp)": "211384", "N50 (bp)": "54053", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.5", "Number of CDSs": "6480", "Average Protein Length": "326.3", "Coding Ratio (%)": "90.5", "Number of rRNAs": "3", "Number of tRNAs": "69", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Jiangella anatolica", "strain": "strain=GTF31", "accession": "GCA_003236295.1", "taxid": 2670374, "species_taxid": 2670374, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2212, "total_fragments": 2224, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Jiangella alkaliphila", "strain": "strain=KCTC 19222", "accession": "GCA_001005145.1", "taxid": 419479, "species_taxid": 419479, "relation_to_type": "type", "validated": true, "ani": 88.7453, "matched_fragments": 1683, "total_fragments": 2224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alkaliphila", "strain": "strain=DSM 45079", "accession": "GCA_900105925.1", "taxid": 419479, "species_taxid": 419479, "relation_to_type": "type", "validated": true, "ani": 88.7285, "matched_fragments": 1702, "total_fragments": 2224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alba", "strain": "strain=YIM 61503", "accession": "GCA_001708125.1", "taxid": 561176, "species_taxid": 561176, "relation_to_type": "type", "validated": true, "ani": 88.696, "matched_fragments": 1693, "total_fragments": 2224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alba", "strain": "strain=DSM 45237", "accession": "GCA_900106035.1", "taxid": 561176, "species_taxid": 561176, "relation_to_type": "type", "validated": true, "ani": 88.6417, "matched_fragments": 1675, "total_fragments": 2224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella muralis", "strain": "strain=DSM 45357", "accession": "GCA_001270745.1", "taxid": 702383, "species_taxid": 702383, "relation_to_type": "type", "validated": true, "ani": 88.6326, "matched_fragments": 1562, "total_fragments": 2224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella rhizosphaerae", "strain": "strain=NEAU-YY265", "accession": "GCA_003579925.1", "taxid": 2293569, "species_taxid": 2293569, "relation_to_type": "type", "validated": true, "ani": 88.4969, "matched_fragments": 1447, "total_fragments": 2224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella aurantiaca", "strain": "strain=8K307", "accession": "GCA_004349105.1", "taxid": 2530373, "species_taxid": 2530373, "relation_to_type": "type", "validated": true, "ani": 88.297, "matched_fragments": 1511, "total_fragments": 2224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella ureilytica", "strain": "strain=KC603", "accession": "GCA_004348545.1", "taxid": 2530374, "species_taxid": 2530374, "relation_to_type": "type", "validated": true, "ani": 87.3109, "matched_fragments": 1501, "total_fragments": 2224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella mangrovi", "strain": "strain=DSM 102122", "accession": "GCA_014204975.1", "taxid": 1524084, "species_taxid": 1524084, "relation_to_type": "type", "validated": true, "ani": 87.2388, "matched_fragments": 1627, "total_fragments": 2224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella jiaozuonensis", "strain": "strain=NEAU-THZ27", "accession": "GCA_005233875.1", "taxid": 2575441, "species_taxid": 2575441, "relation_to_type": "type", "validated": true, "ani": 76.9754, "matched_fragments": 604, "total_fragments": 2224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 160689, "species_taxid": 103837, "relation_to_type": "type", "validated": true, "ani": 76.5864, "matched_fragments": 873, "total_fragments": 2224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura parmotrematis", "strain": "strain=PM05-2", "accession": "GCA_019458805.1", "taxid": 2864039, "species_taxid": 2864039, "relation_to_type": "type", "validated": true, "ani": 76.3481, "matched_fragments": 897, "total_fragments": 2224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rupiterrae", "strain": "strain=DSM 45251", "accession": "GCA_024172125.1", "taxid": 559627, "species_taxid": 559627, "relation_to_type": "type", "validated": true, "ani": 76.3403, "matched_fragments": 813, "total_fragments": 2224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura graeca", "strain": "strain=32-07", "accession": "GCA_019175365.1", "taxid": 2750812, "species_taxid": 2750812, "relation_to_type": "type", "validated": true, "ani": 76.2907, "matched_fragments": 749, "total_fragments": 2224, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003236295.1", "gtdb_species": "s__Jiangella anatolica", "ani": 100.0, "matched_fragments": 2212, "total_fragments": 2224, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Jiangellales;f__Jiangellaceae;g__Jiangella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900105925.1", "gtdb_species": "s__Jiangella alkaliphila", "ani": 88.7257, "matched_fragments": 1703, "total_fragments": 2224, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Jiangellales;f__Jiangellaceae;g__Jiangella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900106035.1", "gtdb_species": "s__Jiangella alba", "ani": 88.638, "matched_fragments": 1674, "total_fragments": 2224, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Jiangellales;f__Jiangellaceae;g__Jiangella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.52", "min_intra_species_ani": "95.05", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Jiangella", "anatolica" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }