{ "type": "genome", "identifier": "GCF_003236395.1", "organism": "Nonomuraea aridisoli", "title": "Nonomuraea aridisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ondokuz Mayis University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003236395.1", "bioproject": "PRJNA224116", "biosample": "SAMN08329201", "wgs_master": "POUD00000000.1", "refseq_category": "reference genome", "taxid": "2070368", "species_taxid": "2070368", "organism_name": "Nonomuraea aridisoli", "infraspecific_name": "strain=KC333", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/18", "asm_name": "ASM323639v1", "asm_submitter": "Ondokuz Mayis University", "gbrs_paired_asm": "GCA_003236395.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/236/395/GCF_003236395.1_ASM323639v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9868672", "genome_size_ungapped": "9868672", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "729", "contig_count": "729", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003236395.1-RS_2024_08_05", "annotation_date": "2024-08-05", "total_gene_count": "9885", "protein_coding_gene_count": "9497", "non_coding_gene_count": "84", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-18", "dateModified": "2018-06-18", "datePublished": "2018-06-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Nonomuraea aridisoli" ], "sample_taxid": [ "2070368" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Turkmenistan:Karakum" ], "sample_host_location_id": [], "data_size": "2.680 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 3.82, "strain_heterogeneity": 60.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9868672", "Number of Sequences": "729", "Longest Sequences (bp)": "130379", "N50 (bp)": "27064", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.3", "Number of CDSs": "9227", "Average Protein Length": "299.8", "Coding Ratio (%)": "84.1", "Number of rRNAs": "5", "Number of tRNAs": "84", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nonomuraea aridisoli", "strain": "strain=KC333", "accession": "GCA_003236395.1", "taxid": 2070368, "species_taxid": 2070368, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2925, "total_fragments": 2962, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nonomuraea terrae", "strain": "strain=CH32", "accession": "GCA_004348995.1", "taxid": 2530383, "species_taxid": 2530383, "relation_to_type": "type", "validated": true, "ani": 93.9027, "matched_fragments": 2345, "total_fragments": 2962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea maritima", "strain": "strain=CGMCC 4.5681", "accession": "GCA_900100395.1", "taxid": 683260, "species_taxid": 683260, "relation_to_type": "type", "validated": true, "ani": 87.7194, "matched_fragments": 1951, "total_fragments": 2962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rubra", "strain": "strain=DSM 43768", "accession": "GCA_014207985.1", "taxid": 46180, "species_taxid": 46180, "relation_to_type": "type", "validated": true, "ani": 85.9085, "matched_fragments": 2160, "total_fragments": 2962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea solani", "strain": "strain=CGMCC 4.7037", "accession": "GCA_900108335.1", "taxid": 1144553, "species_taxid": 1144553, "relation_to_type": "type", "validated": true, "ani": 85.649, "matched_fragments": 2027, "total_fragments": 2962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea fuscirosea", "strain": "strain=CGMCC 4.7104", "accession": "GCA_003001935.1", "taxid": 1291556, "species_taxid": 1291556, "relation_to_type": "type", "validated": true, "ani": 85.6477, "matched_fragments": 2048, "total_fragments": 2962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea deserti", "strain": "strain=KC310", "accession": "GCA_004348685.1", "taxid": 1848322, "species_taxid": 1848322, "relation_to_type": "type", "validated": true, "ani": 85.3663, "matched_fragments": 1853, "total_fragments": 2962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea angiospora", "strain": "strain=DSM 43173", "accession": "GCA_014873145.1", "taxid": 46172, "species_taxid": 46172, "relation_to_type": "type", "validated": true, "ani": 85.2598, "matched_fragments": 2019, "total_fragments": 2962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=WYY166", "accession": "GCA_009497075.1", "taxid": 2219224, "species_taxid": 2219224, "relation_to_type": "type", "validated": true, "ani": 85.2487, "matched_fragments": 1959, "total_fragments": 2962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=PA1-10", "accession": "GCA_006334985.2", "taxid": 2219224, "species_taxid": 2219224, "relation_to_type": "type", "validated": true, "ani": 85.2306, "matched_fragments": 1954, "total_fragments": 2962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea jabiensis", "strain": "strain=DSM 45507", "accession": "GCA_014204795.1", "taxid": 882448, "species_taxid": 882448, "relation_to_type": "type", "validated": true, "ani": 85.22, "matched_fragments": 1992, "total_fragments": 2962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea mesophila", "strain": "strain=6K102", "accession": "GCA_004352805.1", "taxid": 2530382, "species_taxid": 2530382, "relation_to_type": "type", "validated": true, "ani": 85.0902, "matched_fragments": 1815, "total_fragments": 2962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea diastatica", "strain": "strain=KC712", "accession": "GCA_004349015.1", "taxid": 1848329, "species_taxid": 1848329, "relation_to_type": "type", "validated": true, "ani": 85.0882, "matched_fragments": 1878, "total_fragments": 2962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea basaltis", "strain": "strain=160415", "accession": "GCA_005893125.1", "taxid": 2495887, "species_taxid": 2495887, "relation_to_type": "type", "validated": true, "ani": 84.926, 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