{ "type": "genome", "identifier": "GCF_003240565.2", "organism": "Rhizobium tumorigenes", "title": "Rhizobium tumorigenes", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Julius Kuehn-Institut, Federal Research Centre for Cultivated Plants (JKI), EP", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003240565.2", "bioproject": "PRJNA224116", "biosample": "SAMN07689692", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2041385", "species_taxid": "2041385", "organism_name": "Rhizobium tumorigenes", "infraspecific_name": "strain=1078", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/04/19", "asm_name": "ASM324056v2", "asm_submitter": "Julius Kuehn-Institut, Federal Research Centre for Cultivated Plants (JKI), EP", "gbrs_paired_asm": "GCA_003240565.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/240/565/GCF_003240565.2_ASM324056v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5977727", "genome_size_ungapped": "5977727", "gc_percent": "60.000000", "replicon_count": "6", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003240565.2-RS_2024_04_19", "annotation_date": "2024-04-19", "total_gene_count": "5652", "protein_coding_gene_count": "5422", "non_coding_gene_count": "69", "pubmed_id": "29899540" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-04-19", "dateModified": "2023-04-19", "datePublished": "2023-04-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhizobium tumorigenes" ], "sample_taxid": [ "2041385" ], "sample_host_organism": [ "Rubus sp." ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Serbia" ], "sample_host_location_id": [], "data_size": "1.674 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5977727", "Number of Sequences": "6", "Longest Sequences (bp)": "3664408", "N50 (bp)": "3664408", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.0", "Number of CDSs": "5664", "Average Protein Length": "301.1", "Coding Ratio (%)": "85.6", "Number of rRNAs": "12", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhizobium tumorigenes", "strain": "strain=1078", "accession": "GCA_003240565.1", "taxid": 2041385, "species_taxid": 2041385, 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