{ "type": "genome", "identifier": "GCF_003240585.1", "organism": "Rhizobium tubonense", "title": "Rhizobium tubonense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Julius Kuehn-Institut, Federal Research Centre for Cultivated Plants (JKI), EP", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003240585.1", "bioproject": "PRJNA224116", "biosample": "SAMN07689693", "wgs_master": "PCDP00000000.1", "refseq_category": "reference genome", "taxid": "484088", "species_taxid": "484088", "organism_name": "Rhizobium tubonense", "infraspecific_name": "strain=CCBAU 85046", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/18", "asm_name": "ASM324058v1", "asm_submitter": "Julius Kuehn-Institut, Federal Research Centre for Cultivated Plants (JKI), EP", "gbrs_paired_asm": "GCA_003240585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/240/585/GCF_003240585.1_ASM324058v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6540512", "genome_size_ungapped": "6540512", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "85", "contig_count": "85", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003240585.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "6372", "protein_coding_gene_count": "6079", "non_coding_gene_count": "55", "pubmed_id": "29899540" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-18", "dateModified": "2018-06-18", "datePublished": "2018-06-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhizobium tubonense" ], "sample_taxid": [ "484088" ], "sample_host_organism": [ "Oxytropis glabra" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.851 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6540512", "Number of Sequences": "85", "Longest Sequences (bp)": "665933", "N50 (bp)": "177535", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.3", "Number of CDSs": "6366", "Average Protein Length": "289.9", "Coding Ratio (%)": "84.6", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhizobium tubonense", "strain": "strain=CCBAU 85046", "accession": "GCA_003240585.1", "taxid": 484088, "species_taxid": 484088, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2140, "total_fragments": 2146, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Agrobacterium rhizogenes", "strain": "strain=LMG150", "accession": "GCA_007002985.1", "taxid": 359, "species_taxid": 359, "relation_to_type": "type", "validated": true, "ani": 80.447, "matched_fragments": 956, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium rhizogenes", "strain": "strain=NBRC 13257", "accession": "GCA_000696095.1", "taxid": 359, "species_taxid": 359, "relation_to_type": "type", "validated": true, "ani": 80.4441, "matched_fragments": 954, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium lusitanum", "strain": "strain=P1-7", "accession": "GCA_900094565.1", "taxid": 293958, "species_taxid": 293958, "relation_to_type": "suspected-type", "validated": true, "ani": 80.0951, "matched_fragments": 953, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium jaguaris", "strain": "strain=CCGE525", "accession": "GCA_003627755.1", "taxid": 1312183, "species_taxid": 1312183, "relation_to_type": "type", "validated": true, "ani": 80.0598, "matched_fragments": 978, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium metallidurans", "strain": "strain=DSM 26575", "accession": "GCA_014196505.1", "taxid": 1265931, "species_taxid": 1265931, "relation_to_type": "type", "validated": true, "ani": 80.0566, "matched_fragments": 775, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium redzepovicii", "strain": "strain=18T", "accession": "GCA_019793435.1", "taxid": 2867518, "species_taxid": 2867518, "relation_to_type": "type", "validated": true, "ani": 80.0125, "matched_fragments": 862, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium hainanense", "strain": "strain=CCBAU 57015", "accession": "GCA_900094555.1", "taxid": 52131, "species_taxid": 52131, "relation_to_type": "type", "validated": true, "ani": 80.012, "matched_fragments": 869, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium leguminosarum", "strain": "strain=USDA 2370", "accession": "GCA_003058385.1", "taxid": 384, "species_taxid": 384, "relation_to_type": "suspected-type", "validated": true, "ani": 80.0076, "matched_fragments": 865, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium leguminosarum", "strain": "strain=DSM 106839", "accession": "GCA_014202125.1", "taxid": 384, "species_taxid": 384, "relation_to_type": "suspected-type", "validated": true, "ani": 79.9917, "matched_fragments": 872, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium indigoferae", "strain": "strain=CCBAU 71042", "accession": "GCA_013087605.1", "taxid": 158891, "species_taxid": 158891, "relation_to_type": "type", "validated": true, "ani": 79.9838, "matched_fragments": 866, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium leguminosarum", "strain": "strain=USDA 2370", "accession": "GCA_002008365.1", "taxid": 384, "species_taxid": 384, "relation_to_type": "suspected-type", "validated": true, "ani": 79.9722, "matched_fragments": 880, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium croatiense", "strain": "strain=13T", "accession": "GCA_019793465.1", "taxid": 2867516, "species_taxid": 2867516, "relation_to_type": "type", "validated": true, "ani": 79.97, "matched_fragments": 840, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium tumorigenes", "strain": "strain=1078", "accession": "GCA_003240565.1", "taxid": 2041385, "species_taxid": 2041385, "relation_to_type": "type", "validated": true, "ani": 79.9586, "matched_fragments": 861, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium sophorae", "strain": "strain=CCBAU 03386", "accession": "GCA_013087515.1", "taxid": 1535242, "species_taxid": 1535242, "relation_to_type": "type", "validated": true, "ani": 79.8981, "matched_fragments": 893, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium sophoriradicis", "strain": "strain=CCBAU 03470", "accession": "GCA_003939025.1", "taxid": 1535245, "species_taxid": 1535245, "relation_to_type": "type", "validated": true, "ani": 79.8681, "matched_fragments": 834, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium lentis", "strain": "strain=BLR27", "accession": "GCA_019684715.1", "taxid": 1138194, "species_taxid": 1138194, "relation_to_type": "type", "validated": true, "ani": 79.61, "matched_fragments": 826, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium lentis", "strain": "strain=BLR27", "accession": "GCA_017352135.1", "taxid": 1138194, "species_taxid": 1138194, "relation_to_type": "type", "validated": true, "ani": 79.5692, "matched_fragments": 814, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium viscosum", "strain": "strain=DSM 7307", "accession": "GCA_014873945.1", "taxid": 1673, "species_taxid": 1673, "relation_to_type": "type", "validated": true, "ani": 79.2782, "matched_fragments": 842, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium mongolense", "strain": "strain=USDA 1844", "accession": "GCA_007827505.1", "taxid": 57676, "species_taxid": 57676, "relation_to_type": "type", "validated": true, "ani": 79.254, "matched_fragments": 767, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ciceribacter selenitireducens", "strain": "strain=ATCC BAA-1503", "accession": "GCA_000518785.1", "taxid": 448181, "species_taxid": 448181, "relation_to_type": "type", "validated": true, "ani": 79.1969, "matched_fragments": 582, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium mongolense", "strain": "strain=USDA 1844", "accession": "GCA_000419765.1", "taxid": 57676, "species_taxid": 57676, "relation_to_type": "type", "validated": true, "ani": 79.1235, "matched_fragments": 773, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella zoogloeoides", "strain": "strain=ATCC 19623", "accession": "GCA_020883495.1", "taxid": 352475, "species_taxid": 352475, "relation_to_type": "type", "validated": true, "ani": 79.1119, "matched_fragments": 591, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium mongolense subsp. loessense", "strain": "strain=CGMCC 1.3401", "accession": "GCA_900099775.1", "taxid": 158890, "species_taxid": 57676, "relation_to_type": "type", "validated": true, "ani": 79.0461, "matched_fragments": 750, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella fusca", "strain": "strain=DSM 21319", "accession": "GCA_014203155.1", "taxid": 544480, "species_taxid": 544480, "relation_to_type": "type", "validated": true, "ani": 78.88, "matched_fragments": 617, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella curvata", "strain": "strain=C3", "accession": "GCA_022899935.1", "taxid": 1817964, "species_taxid": 1817964, "relation_to_type": "type", "validated": true, "ani": 78.7521, "matched_fragments": 599, "total_fragments": 2146, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003240585.1", "gtdb_species": "s__Rhizobium tubonense", "ani": 100.0, "matched_fragments": 2140, "total_fragments": 2146, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014195095.1", "gtdb_species": "s__Rhizobium sp014195095", "ani": 80.673, "matched_fragments": 967, "total_fragments": 2146, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009498525.1", "gtdb_species": "s__Rhizobium sp009498525", "ani": 80.4832, "matched_fragments": 951, "total_fragments": 2146, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016864575.1", "gtdb_species": "s__Rhizobium sp900468685", "ani": 80.2794, "matched_fragments": 828, "total_fragments": 2146, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.96", "min_intra_species_ani": "96.95", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_007000325.1", "gtdb_species": "s__Rhizobium sp007000325", "ani": 80.1782, "matched_fragments": 827, "total_fragments": 2146, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.07", "min_intra_species_ani": "97.10", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_004341625.1", "gtdb_species": "s__Rhizobium sp004341625", "ani": 80.167, "matched_fragments": 1008, "total_fragments": 2146, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.83", "min_intra_species_ani": "97.83", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002953715.1", "gtdb_species": "s__Rhizobium leguminosarum_K", "ani": 80.1644, "matched_fragments": 875, "total_fragments": 2146, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.64", "min_intra_species_ani": "95.51", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.83", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_000172795.2", "gtdb_species": "s__Rhizobium sp000172795", "ani": 80.1242, "matched_fragments": 867, "total_fragments": 2146, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002211285.1", "gtdb_species": "s__Rhizobium sp002211285", "ani": 80.1172, "matched_fragments": 836, "total_fragments": 2146, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902706285.1", "gtdb_species": "s__Rhizobium sp902706285", "ani": 80.0702, "matched_fragments": 776, "total_fragments": 2146, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003627755.1", "gtdb_species": "s__Rhizobium jaguaris", "ani": 80.0516, "matched_fragments": 980, "total_fragments": 2146, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900094555.1", "gtdb_species": "s__Rhizobium hainanense", "ani": 79.9995, "matched_fragments": 871, "total_fragments": 2146, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003240565.1", "gtdb_species": "s__Rhizobium tumorigenes", "ani": 79.9526, "matched_fragments": 862, "total_fragments": 2146, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.15", "min_intra_species_ani": "97.15", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900472625.1", "gtdb_species": "s__Rhizobium sp900472625", "ani": 79.9501, "matched_fragments": 776, "total_fragments": 2146, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001657485.1", "gtdb_species": "s__Rhizobium sp001657485", "ani": 79.9344, "matched_fragments": 895, "total_fragments": 2146, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.95", "min_intra_species_ani": "97.95", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900470805.1", "gtdb_species": "s__Rhizobium sp900470805", "ani": 79.7865, "matched_fragments": 763, "total_fragments": 2146, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014197535.1", "gtdb_species": "s__Rhizobium aethiopicum_A", "ani": 79.782, "matched_fragments": 831, "total_fragments": 2146, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000271845.1", "gtdb_species": "s__Rhizobium leguminosarum_G", "ani": 79.7721, "matched_fragments": 878, "total_fragments": 2146, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900472605.1", "gtdb_species": "s__Rhizobium sp900472605", "ani": 79.7181, "matched_fragments": 760, "total_fragments": 2146, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.47", "min_intra_species_ani": "95.34", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.80", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_004345245.1", "gtdb_species": "s__Rhizobium sp004345245", "ani": 79.4122, "matched_fragments": 807, "total_fragments": 2146, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900468805.1", "gtdb_species": "s__Rhizobium sp900468805", "ani": 79.3753, "matched_fragments": 828, "total_fragments": 2146, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.10", "min_intra_species_ani": "98.22", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_009498215.1", "gtdb_species": "s__Rhizobium grahamii_A", "ani": 79.365, "matched_fragments": 692, "total_fragments": 2146, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900466475.1", "gtdb_species": "s__Rhizobium sp900466475", "ani": 79.2349, "matched_fragments": 817, "total_fragments": 2146, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.15", "min_intra_species_ani": "97.80", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.94", "num_clustered_genomes": 17, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.26, "cell_length": 0.301, "doubling_h": 0.225, "growth_tmp": 30.0, "optimum_tmp": 27.5, "optimum_ph": 6.983, "genome_size": 6239444.624, "gc_content": 60.147, "coding_genes": 6587.615, "rRNA16S_genes": 3.0, "tRNA_genes": 51.725, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Rhizobium", "tubonense" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }