{ "type": "genome", "identifier": "GCF_003245365.1", "organism": "Helicobacter valdiviensis", "title": "Helicobacter valdiviensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institut Pasteur Montevideo", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003245365.1", "bioproject": "PRJNA224116", "biosample": "SAMN06648846", "wgs_master": "NBIU00000000.1", "refseq_category": "reference genome", "taxid": "1458358", "species_taxid": "1458358", "organism_name": "Helicobacter valdiviensis", "infraspecific_name": "strain=WBE14", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/18", "asm_name": "ASM324536v1", "asm_submitter": "Institut Pasteur Montevideo", "gbrs_paired_asm": "GCA_003245365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/245/365/GCF_003245365.1_ASM324536v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2181291", "genome_size_ungapped": "2181291", "gc_percent": "32.000000", "replicon_count": "0", "scaffold_count": "140", "contig_count": "140", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003245365.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "2199", "protein_coding_gene_count": "2071", "non_coding_gene_count": "43", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-18", "dateModified": "2018-06-18", "datePublished": "2018-06-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Helicobacter valdiviensis" ], "sample_taxid": [ "1458358" ], "sample_host_organism": [ "wild bird" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"status": "below_threshold" }, { "organism_name": "Helicobacter canadensis", "strain": "strain=MIT 98-5491", "accession": "GCA_000155455.1", "taxid": 123841, "species_taxid": 123841, "relation_to_type": "type", "validated": true, "ani": 77.8307, "matched_fragments": 199, "total_fragments": 671, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter canadensis", "strain": "strain=MIT 98-5491", "accession": "GCA_000162575.1", "taxid": 123841, "species_taxid": 123841, "relation_to_type": "type", "validated": true, "ani": 77.8215, "matched_fragments": 204, "total_fragments": 671, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter turcicus", "strain": "strain=Faydin-H70", "accession": "GCA_019711685.1", "taxid": 2867412, "species_taxid": 2867412, "relation_to_type": "type", "validated": true, "ani": 77.6818, "matched_fragments": 165, "total_fragments": 671, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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