{
    "type": "genome",
    "identifier": "GCF_003254255.1",
    "organism": "Lachnoanaerobaculum umeaense",
    "title": "Lachnoanaerobaculum umeaense",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003254255.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08770186",
        "wgs_master": "QKZH00000000.1",
        "refseq_category": "na",
        "taxid": "617123",
        "species_taxid": "617123",
        "organism_name": "Lachnoanaerobaculum umeaense",
        "infraspecific_name": "strain=DSM 23576",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/06/19",
        "asm_name": "ASM325425v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_003254255.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/254/255/GCF_003254255.1_ASM325425v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2705257",
        "genome_size_ungapped": "2704395",
        "gc_percent": "35.000000",
        "replicon_count": "0",
        "scaffold_count": "78",
        "contig_count": "78",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-28",
        "total_gene_count": "2563",
        "protein_coding_gene_count": "2444",
        "non_coding_gene_count": "50",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-06-19",
    "dateModified": "2018-06-19",
    "datePublished": "2018-06-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lachnoanaerobaculum umeaense"
        ],
        "sample_taxid": [
            "617123"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.754 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2705257",
        "Number of Sequences": "78",
        "Longest Sequences (bp)": "153905",
        "N50 (bp)": "74106",
        "Gap Ratio (%)": "0.031864",
        "GCcontent (%)": "34.9",
        "Number of CDSs": "2518",
        "Average Protein Length": "319.9",
        "Coding Ratio (%)": "89.3",
        "Number of rRNAs": "1",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Lachnoanaerobaculum umeaense",
                "strain": "strain=DSM 23576",
                "accession": "GCA_003254255.1",
                "taxid": 617123,
                "species_taxid": 617123,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9999,
                "matched_fragments": 860,
                "total_fragments": 862,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lachnoanaerobaculum umeaense",
                "strain": "strain=DSM 23576 = CCUG 58757",
                "accession": "GCA_003589745.1",
                "taxid": 617123,
                "species_taxid": 617123,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9961,
                "matched_fragments": 860,
                "total_fragments": 862,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lachnoanaerobaculum gingivalis",
                "strain": "strain=KCOM 2030",
                "accession": "GCA_003862475.1",
                "taxid": 2490855,
                "species_taxid": 2490855,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.5927,
                "matched_fragments": 607,
                "total_fragments": 862,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lachnoanaerobaculum orale",
                "strain": "strain=DSM 24553",
                "accession": "GCA_003862485.1",
                "taxid": 979627,
                "species_taxid": 979627,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.7823,
                "matched_fragments": 561,
                "total_fragments": 862,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lachnoanaerobaculum saburreum",
                "strain": "strain=DSM 3986",
                "accession": "GCA_000185385.1",
                "taxid": 467210,
                "species_taxid": 467210,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0095,
                "matched_fragments": 538,
                "total_fragments": 862,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003589745.1",
                "gtdb_species": "s__Lachnoanaerobaculum umeaense",
                "ani": 99.9961,
                "matched_fragments": 860,
                "total_fragments": 862,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000287675.1",
                "gtdb_species": "s__Lachnoanaerobaculum sp000287675",
                "ani": 86.2603,
                "matched_fragments": 616,
                "total_fragments": 862,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.71",
                "min_intra_species_ani": "96.71",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000296385.1",
                "gtdb_species": "s__Lachnoanaerobaculum sp000296385",
                "ani": 85.7207,
                "matched_fragments": 611,
                "total_fragments": 862,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.95",
                "min_intra_species_ani": "96.95",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003862475.1",
                "gtdb_species": "s__Lachnoanaerobaculum gingivalis",
                "ani": 85.5495,
                "matched_fragments": 610,
                "total_fragments": 862,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000209465.1",
                "gtdb_species": "s__Lachnoanaerobaculum sp000209465",
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                "matched_fragments": 599,
                "total_fragments": 862,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.01",
                "min_intra_species_ani": "98.01",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003862485.1",
                "gtdb_species": "s__Lachnoanaerobaculum orale",
                "ani": 82.7844,
                "matched_fragments": 561,
                "total_fragments": 862,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.98",
                "min_intra_species_ani": "95.69",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_000185385.1",
                "gtdb_species": "s__Lachnoanaerobaculum saburreum",
                "ani": 82.0084,
                "matched_fragments": 538,
                "total_fragments": 862,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.52",
                "min_intra_species_ani": "97.46",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
        "cell_length": 1.176,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": null,
        "optimum_ph": 6.75,
        "genome_size": 2705257.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Lachnoanaerobaculum",
        "umeaense"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}