{
    "type": "genome",
    "identifier": "GCF_003254445.1",
    "organism": "Bacillus safensis subsp. osmophilus",
    "title": "Bacillus safensis subsp. osmophilus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Universidad de Santiago de Compostela",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003254445.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08905838",
        "wgs_master": "QBHN00000000.1",
        "refseq_category": "na",
        "taxid": "1982610",
        "species_taxid": "561879",
        "organism_name": "Bacillus safensis subsp. osmophilus",
        "infraspecific_name": "strain=BC09",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/06/18",
        "asm_name": "ASM325444v1",
        "asm_submitter": "Universidad de Santiago de Compostela",
        "gbrs_paired_asm": "GCA_003254445.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/254/445/GCF_003254445.1_ASM325444v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3982198",
        "genome_size_ungapped": "3982198",
        "gc_percent": "41.000000",
        "replicon_count": "0",
        "scaffold_count": "72",
        "contig_count": "72",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003254445.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "4239",
        "protein_coding_gene_count": "4043",
        "non_coding_gene_count": "94",
        "pubmed_id": "30461378"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-06-18",
    "dateModified": "2018-06-18",
    "datePublished": "2018-06-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bacillus safensis subsp. osmophilus"
        ],
        "sample_taxid": [
            "1982610"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain"
        ],
        "sample_host_location_id": [],
        "data_size": "1.135 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3982198",
        "Number of Sequences": "72",
        "Longest Sequences (bp)": "297926",
        "N50 (bp)": "108699",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "40.9",
        "Number of CDSs": "4114",
        "Average Protein Length": "279.5",
        "Coding Ratio (%)": "86.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "71",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Bacillus safensis subsp. osmophilus",
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                "accession": "GCA_003254445.1",
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                "species_taxid": 561879,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1293,
                "total_fragments": 1297,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bacillus safensis",
                "strain": "strain=FO-36b",
                "accession": "GCA_000691165.1",
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                "species_taxid": 561879,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.7963,
                "matched_fragments": 1126,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bacillus safensis",
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                "status": "conclusive"
            },
            {
                "organism_name": "Bacillus australimaris",
                "strain": "strain=NH7I_1",
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                "species_taxid": 1326968,
                "relation_to_type": "type",
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                "ani": 93.1284,
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                "total_fragments": 1297,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus pumilus",
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                "accession": "GCA_000172815.1",
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                "relation_to_type": "suspected-type",
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                "ani": 91.3999,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus pumilus",
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                "accession": "GCA_900186955.1",
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                "species_taxid": 1408,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 91.3932,
                "matched_fragments": 1119,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus altitudinis",
                "strain": "strain=41KF2b",
                "accession": "GCA_000691145.1",
                "taxid": 293387,
                "species_taxid": 293387,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1089,
                "total_fragments": 1297,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Metabacillus dongyingensis",
                "strain": "strain=BY2G20",
                "accession": "GCA_019933155.2",
                "taxid": 2874282,
                "species_taxid": 2874282,
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                "matched_fragments": 93,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus anthracis",
                "strain": "strain=Vollum",
                "accession": "GCA_022221345.1",
                "taxid": 1392,
                "species_taxid": 1392,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4633,
                "matched_fragments": 59,
                "total_fragments": 1297,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cytobacillus solani",
                "strain": "strain=FJAT-18043",
                "accession": "GCA_001420595.1",
                "taxid": 1637975,
                "species_taxid": 1637975,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0726,
                "matched_fragments": 92,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anoxybacillus kestanbolensis",
                "strain": "strain=NCIMB 13971",
                "accession": "GCA_023653015.1",
                "taxid": 227476,
                "species_taxid": 227476,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5591,
                "matched_fragments": 50,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
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            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_000691165.1",
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                "matched_fragments": 1126,
                "total_fragments": 1297,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
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            },
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 4,
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            },
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                "mean_intra_species_ani": "N/A",
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            },
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                "num_clustered_genomes": 117,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.456,
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    "_genome_taxon": [
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        "safensis",
        "subsp.",
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}