{ "type": "genome", "identifier": "GCF_003254625.1", "organism": "Flavobacterium ginsenosidimutans", "title": "Flavobacterium ginsenosidimutans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003254625.1", "bioproject": "PRJNA224116", "biosample": "SAMN09303191", "wgs_master": "QJRJ00000000.1", "refseq_category": "na", "taxid": "687844", "species_taxid": "687844", "organism_name": "Flavobacterium ginsenosidimutans", "infraspecific_name": "strain=THG 01", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/18", "asm_name": "ASM325462v1", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_003254625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/254/625/GCF_003254625.1_ASM325462v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5483841", "genome_size_ungapped": "5483841", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "82", "contig_count": "82", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003254625.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4713", "protein_coding_gene_count": "4622", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-18", "dateModified": "2018-06-18", "datePublished": "2018-06-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium ginsenosidimutans" ], "sample_taxid": [ "687844" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.523 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5483841", "Number of Sequences": "82", "Longest Sequences (bp)": "668894", "N50 (bp)": "332921", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.5", "Number of CDSs": "4585", "Average Protein Length": "342.4", "Coding Ratio (%)": "85.9", "Number of rRNAs": "0", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium ginsenosidimutans", "strain": "strain=THG 01", "accession": "GCA_003254625.1", "taxid": 687844, "species_taxid": 687844, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1801, "total_fragments": 1801, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 88.4906, "matched_fragments": 1373, "total_fragments": 1801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sharifuzzamanii", "strain": "strain=A7.6", "accession": "GCA_003254585.1", "taxid": 2211133, "species_taxid": 2211133, "relation_to_type": "type", "validated": true, "ani": 87.8021, "matched_fragments": 1321, "total_fragments": 1801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium nitrogenifigens", "strain": "strain=DSM 29982", "accession": "GCA_900182675.1", "taxid": 1617283, "species_taxid": 1617283, "relation_to_type": "type", "validated": true, "ani": 87.6331, "matched_fragments": 1316, "total_fragments": 1801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium nitrogenifigens", "strain": "strain=NXU-44", "accession": "GCA_003254565.1", "taxid": 1617283, "species_taxid": 1617283, "relation_to_type": "type", "validated": true, "ani": 87.5706, "matched_fragments": 1322, "total_fragments": 1801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tistrianum", "strain": "strain=GB 56.1", "accession": "GCA_003254545.1", "taxid": 1685414, "species_taxid": 1685414, "relation_to_type": "type", "validated": true, "ani": 87.2981, "matched_fragments": 1297, "total_fragments": 1801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium anhuiense", "strain": "strain=CGMCC 1.6859", "accession": "GCA_900101855.1", "taxid": 459526, "species_taxid": 459526, "relation_to_type": "suspected-type", "validated": true, "ani": 86.9232, "matched_fragments": 1326, "total_fragments": 1801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium chungbukense", "strain": "strain=CS100", "accession": "GCA_020805785.1", "taxid": 877464, "species_taxid": 877464, "relation_to_type": "type", "validated": true, "ani": 85.9056, "matched_fragments": 1304, "total_fragments": 1801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 85.8985, "matched_fragments": 1302, "total_fragments": 1801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fluviale", "strain": "strain=HYN0086", "accession": "GCA_003312915.1", "taxid": 2249356, "species_taxid": 2249356, "relation_to_type": "type", "validated": true, "ani": 85.5611, "matched_fragments": 1221, "total_fragments": 1801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium phragmitis", "strain": "strain=CGMCC 1.10370", "accession": "GCA_900112575.1", "taxid": 739143, "species_taxid": 739143, "relation_to_type": "type", "validated": true, "ani": 85.3315, "matched_fragments": 1330, "total_fragments": 1801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium johnsoniae", "strain": "strain=ATCC 17061", "accession": "GCA_002221975.1", "taxid": 986, "species_taxid": 986, "relation_to_type": "type", "validated": true, "ani": 84.1487, "matched_fragments": 1205, "total_fragments": 1801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium johnsoniae", "strain": "strain=DSM 2064", "accession": "GCA_900142355.1", "taxid": 986, "species_taxid": 986, "relation_to_type": "type", "validated": true, "ani": 84.1442, "matched_fragments": 1242, "total_fragments": 1801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 84.0856, "matched_fragments": 1178, "total_fragments": 1801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 83.5929, "matched_fragments": 1144, "total_fragments": 1801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium foetidum", "strain": "strain=JCM 32085", "accession": "GCA_004634245.1", "taxid": 2026681, "species_taxid": 2026681, "relation_to_type": "type", "validated": true, "ani": 83.5672, "matched_fragments": 1100, "total_fragments": 1801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amniphilum", "strain": "strain=KYPY10", "accession": "GCA_023634845.1", "taxid": 1834035, "species_taxid": 1834035, "relation_to_type": "type", "validated": true, "ani": 77.1307, "matched_fragments": 164, "total_fragments": 1801, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003254625.1", "gtdb_species": "s__Flavobacterium ginsenosidimutans", "ani": 100.0, "matched_fragments": 1801, "total_fragments": 1801, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002303885.1", "gtdb_species": "s__Flavobacterium sp002303885", "ani": 88.5235, "matched_fragments": 1368, "total_fragments": 1801, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "ginsenosidimutans" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }