{ "type": "genome", "identifier": "GCF_003254745.1", "organism": "Flavobacterium aquariorum", "title": "Flavobacterium aquariorum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "INHA University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003254745.1", "bioproject": "PRJNA224116", "biosample": "SAMN09280212", "wgs_master": "QKXH00000000.1", "refseq_category": "reference genome", "taxid": "2217670", "species_taxid": "2217670", "organism_name": "Flavobacterium aquariorum", "infraspecific_name": "strain=IMCC34762", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/19", "asm_name": "ASM325474v1", "asm_submitter": "INHA University", "gbrs_paired_asm": "GCA_003254745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/254/745/GCF_003254745.1_ASM325474v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4378418", "genome_size_ungapped": "4378418", "gc_percent": "34.500000", "replicon_count": "0", "scaffold_count": "57", "contig_count": "57", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003254745.1-RS_2024_04_17", "annotation_date": "2024-04-17", "total_gene_count": "3754", "protein_coding_gene_count": "3674", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-19", "dateModified": "2018-06-19", "datePublished": "2018-06-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium aquariorum" ], "sample_taxid": [ "2217670" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.224 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4378418", "Number of Sequences": "57", "Longest Sequences (bp)": "630378", "N50 (bp)": "326726", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.4", "Number of CDSs": "3660", "Average Protein Length": "342.3", "Coding Ratio (%)": "85.9", "Number of rRNAs": "5", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium aquariorum", "strain": "strain=IMCC34762", "accession": "GCA_003254745.1", "taxid": 2217670, "species_taxid": 2217670, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1443, "total_fragments": 1443, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 86.5527, "matched_fragments": 1101, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium laiguense", "strain": "strain=LB2P30", "accession": "GCA_003097655.1", "taxid": 2169409, "species_taxid": 2169409, "relation_to_type": "type", "validated": true, "ani": 82.7611, "matched_fragments": 813, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gilvum", "strain": "strain=EM1308", "accession": "GCA_000735535.1", "taxid": 1492737, "species_taxid": 1492737, "relation_to_type": "type", "validated": true, "ani": 82.2861, "matched_fragments": 721, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gilvum", "strain": "strain=EM1308", "accession": "GCA_001761465.1", "taxid": 1492737, "species_taxid": 1492737, "relation_to_type": "type", "validated": true, "ani": 82.223, "matched_fragments": 773, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquicola", "strain": "strain=DSM 100880", "accession": "GCA_003385115.1", "taxid": 1682742, "species_taxid": 1682742, "relation_to_type": "type", "validated": true, "ani": 81.7392, "matched_fragments": 833, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fluvii", "strain": "strain=DSM 19978", "accession": "GCA_900129545.1", "taxid": 468056, "species_taxid": 468056, "relation_to_type": "type", "validated": true, "ani": 79.5336, "matched_fragments": 468, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium rhamnosiphilum", "strain": "strain=LB3P52", "accession": "GCA_004349195.1", "taxid": 2541724, "species_taxid": 2541724, "relation_to_type": "type", "validated": true, "ani": 79.4712, "matched_fragments": 485, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium ranwuense", "strain": "strain=LB2P22", "accession": "GCA_004349315.1", "taxid": 2541725, "species_taxid": 2541725, "relation_to_type": "type", "validated": true, "ani": 79.373, "matched_fragments": 487, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gawalongense", "strain": "strain=GSP16", "accession": "GCA_007097265.1", "taxid": 2594432, "species_taxid": 2594432, "relation_to_type": "type", "validated": true, "ani": 79.2867, "matched_fragments": 526, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium pectinovorum", "strain": "strain=DSM 6368", "accession": "GCA_900142715.1", "taxid": 29533, "species_taxid": 29533, "relation_to_type": "type", "validated": true, "ani": 78.7398, "matched_fragments": 459, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium piscis", "strain": "strain=CCUG 60099", "accession": "GCA_002222045.1", "taxid": 1114874, "species_taxid": 1114874, "relation_to_type": "type", "validated": true, "ani": 78.6303, "matched_fragments": 438, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium piscis", "strain": "strain=CCUG 60099", "accession": "GCA_001686925.1", "taxid": 1114874, "species_taxid": 1114874, "relation_to_type": "type", "validated": true, "ani": 78.6168, "matched_fragments": 455, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 78.5534, "matched_fragments": 408, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 78.5481, "matched_fragments": 393, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium alkalisoli", "strain": "strain=XS-5", "accession": "GCA_008000935.1", "taxid": 2602769, "species_taxid": 2602769, "relation_to_type": "type", "validated": true, "ani": 77.1677, "matched_fragments": 87, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 76.302, "matched_fragments": 81, "total_fragments": 1443, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003254745.1", "gtdb_species": "s__Flavobacterium aquariorum", "ani": 100.0, "matched_fragments": 1443, "total_fragments": 1443, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_013284035.1", "gtdb_species": "s__Flavobacterium sp003096795", "ani": 90.5855, "matched_fragments": 1183, "total_fragments": 1443, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", 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95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003097655.1", "gtdb_species": "s__Flavobacterium laiguense", "ani": 82.7785, "matched_fragments": 811, "total_fragments": 1443, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007097385.1", "gtdb_species": "s__Flavobacterium sp007097385", "ani": 82.3303, "matched_fragments": 864, "total_fragments": 1443, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007097265.1", "gtdb_species": "s__Flavobacterium gawalongense", "ani": 79.287, "matched_fragments": 526, "total_fragments": 1443, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.69", "min_intra_species_ani": "99.40", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 5, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.326, "cell_length": 0.278, "doubling_h": 1.271, "growth_tmp": 24.705, "optimum_tmp": 25.047, "optimum_ph": 7.141, "genome_size": 3988255.815, "gc_content": 34.893, "coding_genes": 3154.048, "rRNA16S_genes": 5.145, "tRNA_genes": 58.611, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.347, "range_salinity": 0.333, "facultative_respiration": 0.049, "anaerobic_respiration": 0.019, "aerobic_respiration": 0.931, "mesophilic_range_tmp": 0.789, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.21, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "aquariorum" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }