{ "type": "genome", "identifier": "GCF_003258355.1", "organism": "Confluentibacter sediminis", "title": "Confluentibacter sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Ocean University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003258355.1", "bioproject": "PRJNA224116", "biosample": "SAMN09228019", "wgs_master": "QKPO00000000.1", "refseq_category": "reference genome", "taxid": "2219045", "species_taxid": "2219045", "organism_name": "Confluentibacter sediminis", "infraspecific_name": "strain=DSL-48", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/20", "asm_name": "ASM325835v1", "asm_submitter": "Shanghai Ocean University", "gbrs_paired_asm": "GCA_003258355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/258/355/GCF_003258355.1_ASM325835v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4129331", "genome_size_ungapped": "4129331", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "117", "contig_count": "117", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003258355.1-RS_2024_08_15", "annotation_date": "2024-08-15", "total_gene_count": "3580", "protein_coding_gene_count": "3497", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-20", "dateModified": "2018-06-20", "datePublished": "2018-06-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Confluentibacter sediminis" ], "sample_taxid": [ "2219045" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"below_threshold" }, { "organism_name": "Mariniflexile fucanivorans", "strain": "strain=DSM 18792", "accession": "GCA_004341235.1", "taxid": 264023, "species_taxid": 264023, "relation_to_type": "type", "validated": true, "ani": 78.7704, "matched_fragments": 480, "total_fragments": 1348, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter marinivivus", "strain": "strain=ZY111", "accession": "GCA_003143755.1", "taxid": 2100723, "species_taxid": 2100723, "relation_to_type": "type", "validated": true, "ani": 78.1916, "matched_fragments": 350, "total_fragments": 1348, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter alginicilyticus", "strain": "strain=HZ22", "accession": "GCA_001310225.1", "taxid": 1736674, "species_taxid": 1736674, "relation_to_type": "type", "validated": true, "ani": 78.1082, "matched_fragments": 379, "total_fragments": 1348, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenitalea 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null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Confluentibacter", "sediminis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }