{ "type": "genome", "identifier": "GCF_003258515.1", "organism": "Marinobacter bohaiensis", "title": "Marinobacter bohaiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ocean University of China", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003258515.1", "bioproject": "PRJNA224116", "biosample": "SAMN09218204", "wgs_master": "QGEH00000000.1", "refseq_category": "reference genome", "taxid": "2201898", "species_taxid": "2201898", "organism_name": "Marinobacter bohaiensis", "infraspecific_name": "strain=T17", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/20", "asm_name": "ASM325851v1", "asm_submitter": "Ocean University of China", "gbrs_paired_asm": "GCA_003258515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/258/515/GCF_003258515.1_ASM325851v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4755891", "genome_size_ungapped": "4755891", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "11", "contig_count": "11", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003258515.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4335", "protein_coding_gene_count": "4265", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-20", "dateModified": "2018-06-20", "datePublished": "2018-06-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter bohaiensis" ], "sample_taxid": [ "2201898" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Jiaozhou Bay, Bohai Sea" ], "sample_host_location_id": [], "data_size": "1.326 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4755891", "Number of Sequences": "11", "Longest Sequences (bp)": "2856325", "N50 (bp)": "2856325", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.1", "Number of CDSs": "4286", "Average Protein Length": "330.0", "Coding Ratio (%)": "89.2", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter bohaiensis", "strain": "strain=T17", "accession": "GCA_003258515.1", "taxid": 2201898, "species_taxid": 2201898, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1579, "total_fragments": 1580, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter halodurans", "strain": "strain=YJ-S3-2", "accession": "GCA_004327985.1", "taxid": 2528979, "species_taxid": 2528979, "relation_to_type": "type", "validated": true, "ani": 82.2336, "matched_fragments": 984, "total_fragments": 1580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter mangrovi", "strain": "strain=CHFG3-1-5", "accession": "GCA_016798325.1", "taxid": 2803918, "species_taxid": 2803918, "relation_to_type": "type", "validated": true, "ani": 82.2235, "matched_fragments": 1048, "total_fragments": 1580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter nanhaiticus", "strain": "strain=D15-8W", "accession": "GCA_000364845.1", "taxid": 1305740, "species_taxid": 1305740, "relation_to_type": "type", "validated": true, "ani": 80.1058, "matched_fragments": 846, "total_fragments": 1580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter fonticola", "strain": "strain=CS412", "accession": "GCA_008122265.1", "taxid": 2603215, "species_taxid": 2603215, "relation_to_type": "type", "validated": true, "ani": 79.7317, "matched_fragments": 658, "total_fragments": 1580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter gudaonensis", "strain": "strain=CGMCC 1.6294", "accession": "GCA_900115175.1", "taxid": 375760, "species_taxid": 375760, "relation_to_type": "type", "validated": true, "ani": 79.1869, "matched_fragments": 472, "total_fragments": 1580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter pelagius", "strain": "strain=CGMCC 1.6775", "accession": "GCA_900114925.1", "taxid": 379482, "species_taxid": 379482, "relation_to_type": "type", "validated": true, "ani": 79.1671, "matched_fragments": 479, "total_fragments": 1580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter profundi", "strain": "strain=PWS21", "accession": "GCA_002744715.1", "taxid": 2666256, "species_taxid": 2666256, "relation_to_type": "type", "validated": true, "ani": 78.7781, "matched_fragments": 452, "total_fragments": 1580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 78.6499, "matched_fragments": 420, "total_fragments": 1580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamilnaduibacter salinus", "strain": "strain=Mi-7", "accession": "GCA_002287355.1", "taxid": 1484056, "species_taxid": 1484056, "relation_to_type": "type", "validated": true, "ani": 78.2544, "matched_fragments": 371, "total_fragments": 1580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aromaticivorans", "strain": "strain=MAP12", "accession": "GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 77.5431, "matched_fragments": 269, "total_fragments": 1580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 77.2432, "matched_fragments": 343, "total_fragments": 1580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 77.1682, "matched_fragments": 258, "total_fragments": 1580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas kunmingensis", "strain": "strain=DSM 25974", "accession": "GCA_024397575.1", "taxid": 1211807, "species_taxid": 1211807, "relation_to_type": "type", "validated": true, "ani": 76.9974, "matched_fragments": 204, "total_fragments": 1580, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003258515.1", "gtdb_species": "s__Marinobacter_A bohaiensis", "ani": 100.0, "matched_fragments": 1579, "total_fragments": 1580, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.52", "min_intra_species_ani": "98.52", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_004327985.1", "gtdb_species": "s__Marinobacter_A halodurans", "ani": 82.2346, "matched_fragments": 985, "total_fragments": 1580, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003789045.1", "gtdb_species": "s__Marinobacter_A sp003789045", "ani": 82.2024, "matched_fragments": 1007, "total_fragments": 1580, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.70", "min_intra_species_ani": "97.70", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000364845.1", "gtdb_species": "s__Marinobacter_A nanhaiticus", "ani": 80.0991, "matched_fragments": 847, "total_fragments": 1580, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008122265.1", "gtdb_species": "s__Marinobacter_A fonticola", "ani": 79.7415, "matched_fragments": 656, "total_fragments": 1580, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900115175.1", "gtdb_species": "s__Marinobacter gudaonensis", "ani": 79.1831, "matched_fragments": 473, "total_fragments": 1580, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018623515.1", "gtdb_species": "s__Marinobacter sp018623515", "ani": 78.9709, "matched_fragments": 398, "total_fragments": 1580, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001981305.1", "gtdb_species": "s__Marinobacter lutaoensis", "ani": 78.9606, "matched_fragments": 549, "total_fragments": 1580, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.21", "min_intra_species_ani": "99.12", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_002744715.1", "gtdb_species": "s__Marinobacter profundi", "ani": 78.7876, "matched_fragments": 451, "total_fragments": 1580, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.28", "min_intra_species_ani": "99.28", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_014762755.1", "gtdb_species": "s__Marinobacter sp014762755", "ani": 78.489, "matched_fragments": 364, "total_fragments": 1580, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Marinobacter", "bohaiensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }