{ "type": "genome", "identifier": "GCF_003259155.1", "organism": "Marinimicrobium alkaliphilum", "title": "Marinimicrobium alkaliphilum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003259155.1", "bioproject": "PRJNA224116", "biosample": "SAMN09228976", "wgs_master": "QGMQ00000000.1", "refseq_category": "reference genome", "taxid": "2202654", "species_taxid": "2202654", "organism_name": "Marinimicrobium alkaliphilum", "infraspecific_name": "strain=SW121", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/21", "asm_name": "ASM325915v1", "asm_submitter": "Institute of Microbiology", "gbrs_paired_asm": "GCA_003259155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/259/155/GCF_003259155.1_ASM325915v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3786040", "genome_size_ungapped": "3786040", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003259155.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "3261", "protein_coding_gene_count": "3202", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-21", "dateModified": "2018-06-21", "datePublished": "2018-06-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinimicrobium alkaliphilum" ], "sample_taxid": [ "2202654" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indian Ocean" ], "sample_host_location_id": [], "data_size": "1.073 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3786040", "Number of Sequences": "34", "Longest Sequences (bp)": "775393", "N50 (bp)": "429339", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.5", "Number of CDSs": "3232", "Average Protein Length": "350.6", "Coding Ratio (%)": "89.8", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinimicrobium alkaliphilum", "strain": "strain=SW121", "accession": "GCA_003259155.1", "taxid": 2202654, "species_taxid": 2202654, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1246, "total_fragments": 1246, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinimicrobium koreense", "strain": "strain=DSM 16974", "accession": "GCA_003762925.1", "taxid": 306545, "species_taxid": 306545, "relation_to_type": "type", "validated": true, "ani": 77.9089, "matched_fragments": 289, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinimicrobium agarilyticum", "strain": "strain=DSM 16975", "accession": "GCA_000423345.1", "taxid": 306546, "species_taxid": 306546, "relation_to_type": "type", "validated": true, "ani": 77.8522, "matched_fragments": 259, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoteredinibacter isoporae", "strain": "strain=DSM 22368", "accession": "GCA_014207695.1", "taxid": 570281, "species_taxid": 570281, "relation_to_type": "type", "validated": true, "ani": 77.0991, "matched_fragments": 52, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer donghaiensis", "strain": "strain=CGMCC 1.7063", "accession": "GCA_900129095.1", "taxid": 494016, "species_taxid": 494016, "relation_to_type": "type", "validated": true, "ani": 76.927, "matched_fragments": 123, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exilibacterium tricleocarpae", "strain": "strain=R142", "accession": "GCA_007004655.1", "taxid": 2591008, "species_taxid": 2591008, "relation_to_type": "type", "validated": true, "ani": 76.7107, "matched_fragments": 107, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simiduia agarivorans", "strain": "strain=DSM 21679", "accession": "GCA_000420285.1", "taxid": 447471, "species_taxid": 447471, "relation_to_type": "type", "validated": true, "ani": 76.657, "matched_fragments": 102, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer aggregans", "strain": "strain=CCB-MM1", "accession": "GCA_001750105.1", "taxid": 1769779, "species_taxid": 1769779, "relation_to_type": "type", "validated": true, "ani": 76.6497, "matched_fragments": 104, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer hainanensis", "strain": "strain=NBU-8HK146", "accession": "GCA_014904735.1", "taxid": 2735675, "species_taxid": 2735675, "relation_to_type": "type", "validated": true, "ani": 76.635, "matched_fragments": 121, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellvibrio polysaccharolyticus", "strain": "strain=Ka43", "accession": "GCA_015182315.1", "taxid": 2082724, "species_taxid": 2082724, "relation_to_type": "type", "validated": true, "ani": 76.5911, "matched_fragments": 133, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomaricurvus alcaniphilus", "strain": "strain=MEBiC06469", "accession": "GCA_011440395.1", "taxid": 1166482, "species_taxid": 1166482, "relation_to_type": "type", "validated": true, "ani": 76.5755, "matched_fragments": 134, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomaricurvus alkylphenolicus", "strain": "strain=KCTC 32386", "accession": "GCA_011683955.1", "taxid": 1306991, "species_taxid": 1306991, "relation_to_type": "type", "validated": true, "ani": 76.5568, "matched_fragments": 95, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariicella albida", "strain": "strain=HHU G3-2", "accession": "GCA_018863235.1", "taxid": 2842452, "species_taxid": 2842452, "relation_to_type": "type", "validated": true, "ani": 76.4822, "matched_fragments": 87, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parahaliea maris", "strain": "strain=HSLHS9", "accession": "GCA_008064665.1", "taxid": 2716870, "species_taxid": 2716870, "relation_to_type": "type", "validated": true, "ani": 76.4722, "matched_fragments": 99, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gilvimarinus polysaccharolyticus", "strain": "strain=YN3", "accession": "GCA_001187555.1", "taxid": 863921, "species_taxid": 863921, "relation_to_type": "type", "validated": true, "ani": 76.2853, "matched_fragments": 71, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Teredinibacter turnerae", "strain": "strain=T7902", "accession": "GCA_000379165.1", "taxid": 2426, "species_taxid": 2426, "relation_to_type": "type", "validated": true, "ani": 76.2486, "matched_fragments": 58, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas toyotomiensis", "strain": "strain=JCM 15604", "accession": "GCA_900115695.1", "taxid": 554344, "species_taxid": 554344, "relation_to_type": "type", "validated": true, "ani": 76.133, "matched_fragments": 97, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax balearicus", "strain": "strain=MACL04", "accession": "GCA_025532145.1", "taxid": 413232, "species_taxid": 413232, "relation_to_type": "type", "validated": true, "ani": 76.0676, "matched_fragments": 74, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 76.015, "matched_fragments": 95, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, 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1246, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003259155.1", "gtdb_species": "s__Marinimicrobium_A alkaliphilum", "ani": 100.0, "matched_fragments": 1246, "total_fragments": 1246, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Marinimicrobium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000423345.1", "gtdb_species": "s__Marinimicrobium agarilyticum", "ani": 77.894, "matched_fragments": 258, "total_fragments": 1246, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Marinimicrobium", "ani_circumscription_radius": 95.0, 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