{ "type": "genome", "identifier": "GCF_003259175.1", "organism": "Marinomonas shanghaiensis", "title": "Marinomonas shanghaiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Ocean University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003259175.1", "bioproject": "PRJNA224116", "biosample": "SAMN09228020", "wgs_master": "QGOK00000000.1", "refseq_category": "reference genome", "taxid": "2202418", "species_taxid": "2202418", "organism_name": "Marinomonas shanghaiensis", "infraspecific_name": "strain=DSL-35", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/21", "asm_name": "ASM325917v1", "asm_submitter": "Shanghai Ocean University", "gbrs_paired_asm": "GCA_003259175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/259/175/GCF_003259175.1_ASM325917v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4305670", "genome_size_ungapped": "4305670", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "58", "contig_count": "58", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003259175.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "4002", "protein_coding_gene_count": "3903", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-21", "dateModified": "2018-06-21", "datePublished": "2018-06-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinomonas shanghaiensis" ], "sample_taxid": [ "2202418" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"below_threshold" }, { "organism_name": "Marinomonas polaris", "strain": "strain=DSM 16579", "accession": "GCA_900129155.1", "taxid": 293552, "species_taxid": 293552, "relation_to_type": "type", "validated": true, "ani": 82.2749, "matched_fragments": 965, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinomonas profundi", "strain": "strain=M1K-6", "accession": "GCA_012584435.1", "taxid": 2726122, "species_taxid": 2726122, "relation_to_type": "type", "validated": true, "ani": 82.1467, "matched_fragments": 798, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinomonas profundi", "strain": "strain=M1K-6", "accession": "GCA_020694005.1", "taxid": 2726122, "species_taxid": 2726122, "relation_to_type": "type", "validated": true, "ani": 82.112, "matched_fragments": 821, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinomonas foliarum", 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"filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Marinomonas", "shanghaiensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }