{ "type": "genome", "identifier": "GCF_003259255.1", "organism": "Algoriphagus litoralis", "title": "Algoriphagus litoralis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Ocean University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003259255.1", "bioproject": "PRJNA224116", "biosample": "SAMN09230411", "wgs_master": "QGOL00000000.1", "refseq_category": "reference genome", "taxid": "2202829", "species_taxid": "2202829", "organism_name": "Algoriphagus litoralis", "infraspecific_name": "strain=DSL-12", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/21", "asm_name": "ASM325925v1", "asm_submitter": "Shanghai Ocean University", "gbrs_paired_asm": "GCA_003259255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/259/255/GCF_003259255.1_ASM325925v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4839424", "genome_size_ungapped": "4839424", "gc_percent": "43.500000", "replicon_count": "0", "scaffold_count": "74", "contig_count": "74", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003259255.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4218", "protein_coding_gene_count": "4152", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-21", "dateModified": "2018-06-21", "datePublished": "2018-06-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Algoriphagus litoralis" ], "sample_taxid": [ "2202829" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: East China Sea" ], "sample_host_location_id": [], "data_size": "1.375 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4839424", "Number of Sequences": "74", "Longest Sequences (bp)": "781607", "N50 (bp)": "422252", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.3", "Number of CDSs": "4096", "Average Protein Length": "345.3", "Coding Ratio (%)": "87.7", "Number of rRNAs": "1", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Algoriphagus litoralis", "strain": "strain=DSL-12", "accession": "GCA_003259255.1", "taxid": 2202829, "species_taxid": 2202829, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1583, "total_fragments": 1586, "ani_threshold": 95, 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"s__Algoriphagus hitonicola", "ani": 77.0865, "matched_fragments": 250, "total_fragments": 1586, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.376, "cell_length": 0.213, "doubling_h": 0.69, "growth_tmp": 29.494, "optimum_tmp": 29.152, "optimum_ph": 7.375, "genome_size": 4948757.833, "gc_content": 43.837, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Algoriphagus", "litoralis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }