{ "type": "genome", "identifier": "GCF_003259265.1", "organism": "Gelidibacter algens", "title": "Gelidibacter algens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003259265.1", "bioproject": "PRJNA224116", "biosample": "SAMN05660858", "wgs_master": "QLLQ00000000.1", "refseq_category": "reference genome", "taxid": "49280", "species_taxid": "49280", "organism_name": "Gelidibacter algens", "infraspecific_name": "strain=DSM 12408", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/21", "asm_name": "ASM325926v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003259265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/259/265/GCF_003259265.1_ASM325926v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4459459", "genome_size_ungapped": "4451124", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "55", "contig_count": "55", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003259265.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3819", "protein_coding_gene_count": "3737", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-21", "dateModified": "2018-06-21", "datePublished": "2018-06-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Gelidibacter algens" ], "sample_taxid": [ "49280" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.260 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4459459", "Number of Sequences": "55", "Longest Sequences (bp)": "742810", "N50 (bp)": "205795", "Gap Ratio (%)": "0.186906", "GCcontent (%)": "37.2", "Number of CDSs": "3736", "Average Protein Length": "343.6", "Coding Ratio (%)": "86.4", "Number of rRNAs": "3", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gelidibacter algens", "strain": "strain=DSM 12408", "accession": "GCA_003259265.1", "taxid": 49280, "species_taxid": 49280, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1450, "total_fragments": 1458, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gelidibacter algens", "strain": "strain=ACAM 536", "accession": "GCA_001678675.1", "taxid": 49280, "species_taxid": 49280, "relation_to_type": "type", "validated": true, "ani": 99.9522, "matched_fragments": 1391, "total_fragments": 1458, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gelidibacter gilvus", "strain": "strain=IC158", "accession": "GCA_004115975.1", "taxid": 59602, "species_taxid": 59602, "relation_to_type": "type", "validated": true, "ani": 79.8633, "matched_fragments": 671, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter salicanalis", "strain": "strain=IC162", "accession": "GCA_007997285.1", "taxid": 291193, "species_taxid": 291193, "relation_to_type": "type", "validated": true, "ani": 79.8582, "matched_fragments": 610, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter sediminis", "strain": "strain=DSM 28135", "accession": "GCA_004364975.1", "taxid": 1608710, "species_taxid": 1608710, "relation_to_type": "type", "validated": true, "ani": 79.8559, "matched_fragments": 610, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter mesophilus", "strain": "strain=DSM 14095", "accession": "GCA_000423005.1", "taxid": 169050, "species_taxid": 169050, "relation_to_type": "type", "validated": true, "ani": 79.6369, "matched_fragments": 643, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter pelagius", "strain": "strain=DF109", "accession": "GCA_017581925.1", "taxid": 2819985, "species_taxid": 2819985, "relation_to_type": "type", "validated": true, "ani": 79.5048, "matched_fragments": 651, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter maritimus", "strain": "strain=F6074", "accession": 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"matched_fragments": 117, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 76.8724, "matched_fragments": 144, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001678675.1", "gtdb_species": "s__Gelidibacter algens", "ani": 99.9522, "matched_fragments": 1391, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gelidibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, 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