{ "type": "genome", "identifier": "GCF_003259335.1", "organism": "Chitinophaga skermanii", "title": "Chitinophaga skermanii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003259335.1", "bioproject": "PRJNA224116", "biosample": "SAMN05660647", "wgs_master": "QLLL00000000.1", "refseq_category": "reference genome", "taxid": "331697", "species_taxid": "331697", "organism_name": "Chitinophaga skermanii", "infraspecific_name": "strain=DSM 23857", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/21", "asm_name": "ASM325933v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003259335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/259/335/GCF_003259335.1_ASM325933v1", "excluded_from_refseq": 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"missing" ], "sample_host_location_id": [], "data_size": "1.736 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6114601", "Number of Sequences": "25", "Longest Sequences (bp)": "1000344", "N50 (bp)": "626297", "Gap Ratio (%)": "0.038760", "GCcontent (%)": "41.8", "Number of CDSs": "5002", "Average Protein Length": "349.3", "Coding Ratio (%)": "85.7", "Number of rRNAs": "1", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chitinophaga skermanii", "strain": "strain=DSM 23857", "accession": "GCA_003259335.1", "taxid": 331697, "species_taxid": 331697, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2022, "total_fragments": 2025, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chitinophaga caeni", "strain": "strain=13", "accession": "GCA_002557795.1", "taxid": 2029983, "species_taxid": 2029983, "relation_to_type": "type", "validated": true, "ani": 78.2797, "matched_fragments": 325, "total_fragments": 2025, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga dinghuensis", "strain": "strain=DSM 29821", "accession": "GCA_003259435.1", "taxid": 1539050, "species_taxid": 1539050, "relation_to_type": "type", "validated": true, "ani": 77.4151, "matched_fragments": 161, "total_fragments": 2025, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga silvatica", "strain": "strain=GDMCC 1.1288", "accession": "GCA_003419895.1", "taxid": 2282649, "species_taxid": 2282649, "relation_to_type": "type", "validated": true, "ani": 77.2125, "matched_fragments": 162, "total_fragments": 2025, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga jiangningensis", "strain": "strain=DSM 27406", "accession": "GCA_900142605.1", "taxid": 1419482, "species_taxid": 1419482, "relation_to_type": "type", "validated": true, "ani": 77.0743, "matched_fragments": 159, "total_fragments": 2025, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga hostae", "strain": "strain=2R12", "accession": "GCA_018224885.1", "taxid": 2831022, "species_taxid": 2831022, "relation_to_type": "type", "validated": true, "ani": 77.0538, "matched_fragments": 149, "total_fragments": 2025, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga oryzae", "strain": "strain=1303", "accession": "GCA_012516375.2", "taxid": 2725414, "species_taxid": 2725414, "relation_to_type": "type", "validated": true, "ani": 77.0245, "matched_fragments": 132, "total_fragments": 2025, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga deserti", "strain": 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