{ "type": "genome", "identifier": "GCF_003259375.1", "organism": "Arenibacter echinorum", "title": "Arenibacter echinorum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003259375.1", "bioproject": "PRJNA224116", "biosample": "SAMN03080605", "wgs_master": "QLLN00000000.1", "refseq_category": "reference genome", "taxid": "440515", "species_taxid": "440515", "organism_name": "Arenibacter echinorum", "infraspecific_name": "strain=DSM 23522", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/21", "asm_name": "ASM325937v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003259375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/259/375/GCF_003259375.1_ASM325937v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5193588", "genome_size_ungapped": "5189797", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "24", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003259375.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4316", "protein_coding_gene_count": "4253", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-21", "dateModified": "2018-06-21", "datePublished": "2018-06-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Arenibacter echinorum" ], "sample_taxid": [ "440515" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.468 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5193588", "Number of Sequences": "24", "Longest Sequences (bp)": "918926", "N50 (bp)": "689701", "Gap Ratio (%)": "0.072994", "GCcontent (%)": "39.3", "Number of CDSs": "4226", "Average Protein Length": "356.8", "Coding Ratio (%)": "87.1", "Number of rRNAs": "1", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arenibacter echinorum", "strain": "strain=DSM 23522", "accession": "GCA_003259375.1", "taxid": 440515, "species_taxid": 440515, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1717, "total_fragments": 1718, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Arenibacter algicola", "strain": "strain=TG409", "accession": "GCA_000733925.1", "taxid": 616991, "species_taxid": 616991, "relation_to_type": "type", "validated": true, "ani": 89.7972, "matched_fragments": 1357, "total_fragments": 1718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter palladensis", "strain": "strain=DSM 17539", "accession": "GCA_900129275.1", "taxid": 237373, "species_taxid": 237373, "relation_to_type": "type", "validated": true, "ani": 88.744, "matched_fragments": 1393, "total_fragments": 1718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter troitsensis", "strain": "strain=DSM 19835", "accession": "GCA_900177645.1", "taxid": 188872, "species_taxid": 188872, "relation_to_type": "type", "validated": true, "ani": 87.3812, "matched_fragments": 1301, "total_fragments": 1718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014397245.1", "gtdb_species": "s__Arenibacter arenosicollis", "ani": 83.5106, "matched_fragments": 1180, "total_fragments": 1718, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002909235.1", "gtdb_species": "s__Arenibacter catalasegens", "ani": 82.2184, "matched_fragments": 1126, "total_fragments": 1718, "gtdb_taxonomy": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Arenibacter", "echinorum" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }