{ "type": "genome", "identifier": "GCF_003259435.1", "organism": "Chitinophaga dinghuensis", "title": "Chitinophaga dinghuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003259435.1", "bioproject": "PRJNA224116", "biosample": "SAMN07621075", "wgs_master": "QLMA00000000.1", "refseq_category": "reference genome", "taxid": "1539050", "species_taxid": "1539050", "organism_name": "Chitinophaga dinghuensis", "infraspecific_name": "strain=DSM 29821", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/21", "asm_name": "ASM325943v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003259435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/259/435/GCF_003259435.1_ASM325943v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7116247", "genome_size_ungapped": "7115616", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "24", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003259435.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "5709", "protein_coding_gene_count": "5621", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-21", "dateModified": "2018-06-21", "datePublished": "2018-06-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Chitinophaga dinghuensis" ], "sample_taxid": [ "1539050" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"total_fragments": 2360, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chitinophaga jiangningensis", "strain": "strain=DSM 27406", "accession": "GCA_900142605.1", "taxid": 1419482, "species_taxid": 1419482, "relation_to_type": "type", "validated": true, "ani": 80.7398, "matched_fragments": 945, "total_fragments": 2360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga vietnamensis", "strain": "strain=BD 01", "accession": "GCA_902167635.1", "taxid": 2593957, "species_taxid": 2593957, "relation_to_type": "type", "validated": true, "ani": 79.2134, "matched_fragments": 659, "total_fragments": 2360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga fulva", "strain": "strain=G-6-1-13", "accession": "GCA_012927205.1", "taxid": 2728842, "species_taxid": 2728842, "relation_to_type": "type", "validated": true, "ani": 79.056, "matched_fragments": 576, "total_fragments": 2360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga solisilvae", "strain": "strain=O9", "accession": "GCA_009928525.1", "taxid": 1233460, "species_taxid": 1233460, "relation_to_type": "type", "validated": true, "ani": 79.0219, "matched_fragments": 617, "total_fragments": 2360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga varians", "strain": "strain=KACC 19415", "accession": "GCA_014529945.1", "taxid": 2202339, "species_taxid": 2202339, "relation_to_type": "type", "validated": true, "ani": 78.9122, "matched_fragments": 601, "total_fragments": 2360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga qingshengii", "strain": "strain=JCM 30026", "accession": "GCA_014529935.1", "taxid": 1569794, "species_taxid": 1569794, "relation_to_type": "type", "validated": true, "ani": 78.9034, "matched_fragments": 646, "total_fragments": 2360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga 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