{ "type": "genome", "identifier": "GCF_003259745.1", "organism": "Larkinella arboricola", "title": "Larkinella arboricola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003259745.1", "bioproject": "PRJNA224116", "biosample": "SAMN05660371", "wgs_master": "QLMC00000000.1", "refseq_category": "reference genome", "taxid": "643671", "species_taxid": "643671", "organism_name": "Larkinella arboricola", "infraspecific_name": "strain=DSM 21851", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/21", "asm_name": "ASM325974v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003259745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/259/745/GCF_003259745.1_ASM325974v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7020148", "genome_size_ungapped": "7016227", "gc_percent": "52.000000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003259745.1-RS_2024_09_16", "annotation_date": "2024-09-16", "total_gene_count": "5701", "protein_coding_gene_count": "5622", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-21", "dateModified": "2018-06-21", "datePublished": "2018-06-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Larkinella arboricola" ], "sample_taxid": [ "643671" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Moscow region" ], "sample_host_location_id": [], "data_size": "1.989 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7020148", "Number of Sequences": "36", "Longest Sequences (bp)": "1783105", "N50 (bp)": "1044683", "Gap Ratio (%)": "0.055854", "GCcontent (%)": "51.8", "Number of CDSs": "5596", "Average Protein Length": "365.8", "Coding Ratio (%)": "87.5", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Larkinella arboricola", "strain": "strain=DSM 21851", "accession": "GCA_003259745.1", "taxid": 643671, "species_taxid": 643671, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2319, "total_fragments": 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