{ "type": "genome", "identifier": "GCF_003260015.1", "organism": "Nakamurella deserti", "title": "Nakamurella deserti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003260015.1", "bioproject": "PRJNA224116", "biosample": "SAMN08918028", "wgs_master": "QCXS00000000.1", "refseq_category": "reference genome", "taxid": "2164074", "species_taxid": "2164074", "organism_name": "Nakamurella deserti", "infraspecific_name": "strain=12Sc4-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/22", "asm_name": "ASM326001v1", "asm_submitter": "Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences", "gbrs_paired_asm": "GCA_003260015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/260/015/GCF_003260015.1_ASM326001v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4625266", "genome_size_ungapped": "4625266", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003260015.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4079", "protein_coding_gene_count": "4018", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-22", "dateModified": "2018-06-22", "datePublished": "2018-06-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Nakamurella deserti" ], "sample_taxid": [ "2164074" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Taklamakan desert in Xinjiang" ], "sample_host_location_id": [], "data_size": "1.222 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4625266", "Number of Sequences": "6", "Longest Sequences (bp)": "2938815", "N50 (bp)": "2938815", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.1", "Number of CDSs": "4141", "Average Protein Length": "330.0", "Coding Ratio (%)": "88.6", "Number of rRNAs": "3", "Number of tRNAs": "56", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nakamurella deserti", "strain": "strain=12Sc4-1", "accession": "GCA_003260015.1", "taxid": 2164074, 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"status": "below_threshold" }, { "organism_name": "Saccharothrix algeriensis", "strain": "strain=DSM 44581", "accession": "GCA_016907655.1", "taxid": 173560, "species_taxid": 173560, "relation_to_type": "type", "validated": true, "ani": 76.6241, "matched_fragments": 529, "total_fragments": 1539, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia thailandica", "strain": "strain=NBRC 100428", "accession": "GCA_000308795.1", "taxid": 257275, "species_taxid": 257275, "relation_to_type": "type", "validated": true, "ani": 76.5012, "matched_fragments": 456, "total_fragments": 1539, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides solisilvae", "strain": "strain=Ka25", "accession": "GCA_003194625.1", "taxid": 1542435, "species_taxid": 1542435, "relation_to_type": "type", "validated": true, "ani": 76.322, "matched_fragments": 315, "total_fragments": 1539, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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