{ "type": "genome", "identifier": "GCF_003260195.1", "organism": "Lutibacter citreus", "title": "Lutibacter citreus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003260195.1", "bioproject": "PRJNA224116", "biosample": "SAMN08813454", "wgs_master": "QEIH00000000.1", "refseq_category": "reference genome", "taxid": "2138210", "species_taxid": "2138210", "organism_name": "Lutibacter citreus", "infraspecific_name": "strain=1KV19", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/22", "asm_name": "ASM326019v1", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_003260195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/260/195/GCF_003260195.1_ASM326019v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5115381", "genome_size_ungapped": "5115381", "gc_percent": "29.500000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003260195.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4137", "protein_coding_gene_count": "4072", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-22", "dateModified": "2018-06-22", "datePublished": "2018-06-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Lutibacter citreus" ], "sample_taxid": [ "2138210" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Norway: The north the Yellow River station China" ], "sample_host_location_id": [], "data_size": "1.398 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5115381", "Number of Sequences": "36", "Longest Sequences (bp)": "768056", "N50 (bp)": "534222", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "29.6", "Number of CDSs": "4119", "Average Protein Length": "374.0", "Coding Ratio (%)": "90.4", "Number of rRNAs": "3", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lutibacter citreus", "strain": "strain=1KV19", "accession": "GCA_003260195.1", "taxid": 2138210, "species_taxid": 2138210, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1687, "total_fragments": 1688, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lutibacter oricola", "strain": "strain=DSM 24956", "accession": "GCA_900106565.1", "taxid": 762486, "species_taxid": 762486, "relation_to_type": "type", "validated": true, "ani": 80.829, "matched_fragments": 767, "total_fragments": 1688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter oceani", "strain": "strain=JCM30924", "accession": "GCA_003426875.1", "taxid": 1853311, "species_taxid": 1853311, "relation_to_type": "type", "validated": true, "ani": 80.5481, "matched_fragments": 622, "total_fragments": 1688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter oceani", "strain": "strain=325-5", "accession": "GCA_003384935.1", "taxid": 1853311, "species_taxid": 1853311, "relation_to_type": "type", "validated": true, "ani": 80.5092, "matched_fragments": 628, "total_fragments": 1688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter flavus", "strain": "strain=DSM 27993", "accession": "GCA_900188355.1", "taxid": 691689, "species_taxid": 691689, "relation_to_type": "type", "validated": true, "ani": 80.3116, "matched_fragments": 630, "total_fragments": 1688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter agarilyticus", "strain": "strain=DSM 29150", "accession": "GCA_900188235.1", "taxid": 1109740, "species_taxid": 1109740, "relation_to_type": "type", "validated": true, "ani": 80.1687, "matched_fragments": 615, "total_fragments": 1688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter maritimus", "strain": "strain=DSM 24450", "accession": "GCA_900116115.1", "taxid": 593133, "species_taxid": 593133, "relation_to_type": "type", "validated": true, "ani": 79.5138, "matched_fragments": 552, "total_fragments": 1688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter profundi", "strain": "strain=LP1", "accession": "GCA_001543325.1", "taxid": 1622118, "species_taxid": 1622118, "relation_to_type": "type", "validated": true, "ani": 78.6087, "matched_fragments": 437, "total_fragments": 1688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter undariae", "strain": "strain=KCTC 42175", "accession": "GCA_024918935.1", "taxid": 1574269, "species_taxid": 1574269, "relation_to_type": "type", "validated": true, "ani": 77.4804, "matched_fragments": 332, "total_fragments": 1688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureibaculum algae", "strain": "strain=10Alg 115", "accession": "GCA_006065315.1", "taxid": 2584122, "species_taxid": 2584122, "relation_to_type": "type", "validated": true, "ani": 77.1982, "matched_fragments": 260, "total_fragments": 1688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter septentrionalilitoris", "strain": "strain=ANORD1", "accession": "GCA_009832745.1", "taxid": 2494657, "species_taxid": 2494657, "relation_to_type": "type", "validated": true, "ani": 76.9664, "matched_fragments": 257, "total_fragments": 1688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum haliotis", "strain": "strain=KCTC 52419", "accession": "GCA_025215075.1", "taxid": 1888914, "species_taxid": 1888914, "relation_to_type": "type", "validated": true, "ani": 76.9226, "matched_fragments": 232, "total_fragments": 1688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureibaculum flavum", "strain": "strain=A20", "accession": "GCA_016406085.1", "taxid": 2795986, "species_taxid": 2795986, "relation_to_type": "type", "validated": true, "ani": 76.9093, "matched_fragments": 263, "total_fragments": 1688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella algicola", "strain": "strain=IMCC33238", "accession": "GCA_005869935.1", "taxid": 2575815, "species_taxid": 2575815, "relation_to_type": "type", 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003384935.1", "gtdb_species": "s__Lutibacter oceani", "ani": 80.49, "matched_fragments": 630, "total_fragments": 1688, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lutibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900188355.1", "gtdb_species": "s__Lutibacter flavus", "ani": 80.3254, "matched_fragments": 628, "total_fragments": 1688, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lutibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900188235.1", "gtdb_species": "s__Lutibacter agarilyticus", "ani": 80.1568, "matched_fragments": 614, "total_fragments": 1688, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lutibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014646675.1", "gtdb_species": "s__Lutibacter litoralis", "ani": 80.0643, "matched_fragments": 612, "total_fragments": 1688, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lutibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", 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] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.438, "cell_length": 0.159, "doubling_h": null, "growth_tmp": 27.25, "optimum_tmp": 28.0, "optimum_ph": 7.437, "genome_size": 3662625.611, "gc_content": 29.8, "coding_genes": 2544.0, "rRNA16S_genes": 2.0, "tRNA_genes": 40.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.142, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.857, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Lutibacter", "citreus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }