{ "type": "genome", "identifier": "GCF_003260205.1", "organism": "Winogradskyella tangerina", "title": "Winogradskyella tangerina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003260205.1", "bioproject": "PRJNA224116", "biosample": "SAMN08997732", "wgs_master": "QERF00000000.1", "refseq_category": "reference genome", "taxid": "2023240", "species_taxid": "2023240", "organism_name": "Winogradskyella tangerina", "infraspecific_name": "strain=M1309", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/22", "asm_name": "ASM326020v1", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_003260205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/260/205/GCF_003260205.1_ASM326020v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3517112", "genome_size_ungapped": "3517112", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003260205.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3206", "protein_coding_gene_count": "3155", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-22", "dateModified": "2018-06-22", "datePublished": "2018-06-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Winogradskyella tangerina" ], "sample_taxid": [ "2023240" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Weihai" ], "sample_host_location_id": [], "data_size": "0.993 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3517112", "Number of Sequences": "16", "Longest Sequences (bp)": "617984", "N50 (bp)": "341524", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.1", "Number of CDSs": "3162", "Average Protein Length": "336.7", "Coding Ratio (%)": "90.8", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Winogradskyella tangerina", "strain": "strain=M1309", "accession": "GCA_003260205.1", "taxid": 2023240, "species_taxid": 2023240, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1163, "total_fragments": 1164, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Winogradskyella algicola", "strain": "strain=IMCC33238", "accession": "GCA_005869935.1", "taxid": 2575815, "species_taxid": 2575815, "relation_to_type": "type", "validated": true, "ani": 78.5932, "matched_fragments": 433, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella flava", "strain": "strain=KCTC 52348", "accession": "GCA_014243395.1", "taxid": 1884876, "species_taxid": 1884876, "relation_to_type": "type", "validated": true, "ani": 78.3569, "matched_fragments": 411, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ouciana", "strain": "strain=ZXX205", "accession": "GCA_009709615.1", "taxid": 2608631, "species_taxid": 2608631, "relation_to_type": "type", "validated": true, "ani": 78.2408, "matched_fragments": 440, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014297365.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 78.1034, "matched_fragments": 386, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014284085.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 78.1034, "matched_fragments": 386, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella litoriviva", "strain": "strain=KMM6491", "accession": "GCA_013249065.1", "taxid": 1220182, "species_taxid": 1220182, "relation_to_type": "type", "validated": true, "ani": 77.7644, "matched_fragments": 300, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella schleiferi", "strain": "strain=Z215", "accession": "GCA_013394655.1", "taxid": 2686078, "species_taxid": 2686078, "relation_to_type": "type", "validated": true, "ani": 77.7097, "matched_fragments": 306, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella sediminis", "strain": "strain=DSM 28134", "accession": "GCA_003387355.1", "taxid": 1382466, "species_taxid": 1382466, "relation_to_type": "type", "validated": true, "ani": 77.6906, "matched_fragments": 276, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella helgolandensis", "strain": "strain=Z963", "accession": "GCA_013404085.1", "taxid": 2697010, "species_taxid": 2697010, "relation_to_type": "type", "validated": true, "ani": 77.6352, "matched_fragments": 305, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella vidalii", "strain": "strain=HL634", "accession": "GCA_013403955.1", "taxid": 2615024, "species_taxid": 2615024, "relation_to_type": "type", "validated": true, "ani": 77.5899, "matched_fragments": 276, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera marina", "strain": "strain=NBU2968", "accession": "GCA_019880635.1", "taxid": 2873265, "species_taxid": 2873265, "relation_to_type": "type", "validated": true, "ani": 77.3567, "matched_fragments": 155, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella haliclonae", "strain": "strain=CCM 8681", "accession": "GCA_014635865.1", "taxid": 2048558, "species_taxid": 2048558, "relation_to_type": "type", "validated": true, "ani": 77.1848, "matched_fragments": 272, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella flava", "strain": "strain=T58", "accession": "GCA_004310325.1", "taxid": 2527939, 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