{ "type": "genome", "identifier": "GCF_003261635.1", "organism": "Kribbella monticola", "title": "Kribbella monticola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of life Science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003261635.1", "bioproject": "PRJNA224116", "biosample": "SAMN09197656", "wgs_master": "QFXK00000000.1", "refseq_category": "reference genome", "taxid": "2185285", "species_taxid": "2185285", "organism_name": "Kribbella monticola", "infraspecific_name": "strain=NEAU-SW521", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/25", "asm_name": "ASM326163v1", "asm_submitter": "School of life Science", "gbrs_paired_asm": "GCA_003261635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/261/635/GCF_003261635.1_ASM326163v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8028932", "genome_size_ungapped": "8028932", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "92", "contig_count": "92", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003261635.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "7406", "protein_coding_gene_count": "7312", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-25", "dateModified": "2018-06-25", "datePublished": "2018-06-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Kribbella monticola" ], "sample_taxid": [ "2185285" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Harbin" ], "sample_host_location_id": [], "data_size": "2.185 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8028932", "Number of Sequences": "92", "Longest Sequences (bp)": "628289", "N50 (bp)": "532999", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.8", "Number of CDSs": "7428", "Average Protein Length": "327.8", "Coding Ratio (%)": "91.0", "Number of rRNAs": "3", "Number of tRNAs": "68", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kribbella monticola", "strain": "strain=NEAU-SW521", "accession": "GCA_003261635.1", "taxid": 2185285, "species_taxid": 2185285, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2642, "total_fragments": 2644, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kribbella catacumbae", "strain": "strain=DSM 19601", "accession": "GCA_000372465.1", "taxid": 460086, "species_taxid": 460086, "relation_to_type": "type", "validated": true, "ani": 83.8011, "matched_fragments": 1727, "total_fragments": 2644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella flavida", "strain": "strain=DSM 17836", "accession": "GCA_000024345.1", "taxid": 182640, "species_taxid": 182640, "relation_to_type": "type", "validated": true, "ani": 83.4393, "matched_fragments": 1594, "total_fragments": 2644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella italica", "strain": "strain=DSM 28967", "accession": "GCA_014205135.1", "taxid": 1540520, "species_taxid": 1540520, "relation_to_type": "type", "validated": true, "ani": 83.3217, "matched_fragments": 1668, "total_fragments": 2644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella amoyensis", "strain": "strain=DSM 24683", "accession": "GCA_007828865.1", "taxid": 996641, "species_taxid": 996641, "relation_to_type": "type", "validated": true, "ani": 82.9297, "matched_fragments": 1588, "total_fragments": 2644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella turkmenica", "strain": "strain=16K104", "accession": "GCA_004348725.1", "taxid": 2530375, "species_taxid": 2530375, "relation_to_type": "type", "validated": true, "ani": 82.8255, "matched_fragments": 1384, "total_fragments": 2644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella capetownensis", "strain": "strain=YM53", "accession": "GCA_004331485.1", "taxid": 1572659, "species_taxid": 1572659, "relation_to_type": "type", "validated": true, "ani": 82.6114, "matched_fragments": 1579, "total_fragments": 2644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella jiaozuonensis", "strain": "strain=NEAU-THZ27", "accession": "GCA_005233875.1", "taxid": 2575441, "species_taxid": 2575441, "relation_to_type": "type", "validated": true, "ani": 82.4216, "matched_fragments": 1536, "total_fragments": 2644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella shirazensis", "strain": "strain=DSM 45490", "accession": "GCA_011761605.1", "taxid": 1105143, "species_taxid": 1105143, "relation_to_type": "type", "validated": true, "ani": 82.3434, "matched_fragments": 1483, "total_fragments": 2644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella sindirgiensis", "strain": "strain=DSM 27082", "accession": "GCA_004331435.1", "taxid": 1124744, "species_taxid": 1124744, "relation_to_type": "type", "validated": true, "ani": 82.3383, "matched_fragments": 1509, "total_fragments": 2644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella speibonae", "strain": "strain=YM55", "accession": "GCA_004331375.1", "taxid": 1572660, "species_taxid": 1572660, "relation_to_type": "type", "validated": true, "ani": 82.2365, "matched_fragments": 1543, "total_fragments": 2644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella solani", "strain": "strain=DSM 17294", "accession": "GCA_014205295.1", "taxid": 236067, "species_taxid": 236067, "relation_to_type": "type", "validated": true, "ani": 81.9135, "matched_fragments": 1385, "total_fragments": 2644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella antibiotica", "strain": "strain=JCM 13523", "accession": "GCA_004349055.1", "taxid": 190195, "species_taxid": 190195, "relation_to_type": "type", "validated": true, "ani": 81.7871, "matched_fragments": 1416, "total_fragments": 2644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 77.7739, "matched_fragments": 514, "total_fragments": 2644, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 2.46, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003261635.1", "gtdb_species": "s__Kribbella monticola", "ani": 100.0, "matched_fragments": 2642, "total_fragments": 2644, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004365175.1", "gtdb_species": "s__Kribbella sp004365175", "ani": 93.3644, "matched_fragments": 2382, "total_fragments": 2644, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014217565.1", "gtdb_species": "s__Kribbella qitaiheensis", "ani": 87.4734, "matched_fragments": 1995, "total_fragments": 2644, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004345365.1", "gtdb_species": "s__Kribbella sp004345365", "ani": 83.9414, "matched_fragments": 1700, "total_fragments": 2644, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.33", "min_intra_species_ani": "95.31", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000372465.1", "gtdb_species": "s__Kribbella catacumbae", "ani": 83.7931, "matched_fragments": 1730, "total_fragments": 2644, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001984195.1", "gtdb_species": "s__Kribbella sp001984195", "ani": 83.484, "matched_fragments": 1621, "total_fragments": 2644, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000024345.1", "gtdb_species": "s__Kribbella flavida", "ani": 83.4516, "matched_fragments": 1591, "total_fragments": 2644, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014205135.1", "gtdb_species": "s__Kribbella italica", "ani": 83.3112, "matched_fragments": 1670, "total_fragments": 2644, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004361855.1", "gtdb_species": "s__Kribbella sp004361855", "ani": 83.0934, "matched_fragments": 1625, "total_fragments": 2644, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007828865.1", "gtdb_species": "s__Kribbella amoyensis", "ani": 82.9508, "matched_fragments": 1584, "total_fragments": 2644, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004366075.1", "gtdb_species": "s__Kribbella sp004366075", "ani": 82.339, "matched_fragments": 1532, "total_fragments": 2644, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.22", "min_intra_species_ani": "95.50", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.398, "cell_length": 0.397, "doubling_h": null, "growth_tmp": 28.295, "optimum_tmp": 29.25, "optimum_ph": 7.093, "genome_size": 8603649.2, "gc_content": 69.05, "coding_genes": 6915.0, "rRNA16S_genes": 2.0, "tRNA_genes": 51.0, "gram_stain": 1.0, "sporulation": 0.9, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.9, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.1, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Kribbella", "monticola" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }