{ "type": "genome", "identifier": "GCF_003263785.1", "organism": "Vibrio variabilis", "title": "Vibrio variabilis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CIAD, A.C. Mazatlan Unit for Aquaculture", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003263785.1", "bioproject": "PRJNA224116", "biosample": "SAMN03338703", "wgs_master": "JYJK00000000.1", "refseq_category": "reference genome", "taxid": "990271", "species_taxid": "990271", "organism_name": "Vibrio variabilis", "infraspecific_name": "strain=CAIM 1454", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/25", "asm_name": "ASM326378v1", "asm_submitter": "CIAD, A.C. Mazatlan Unit for Aquaculture", "gbrs_paired_asm": "GCA_003263785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/263/785/GCF_003263785.1_ASM326378v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5082486", "genome_size_ungapped": "5082486", "gc_percent": "46.500000", "replicon_count": "0", "scaffold_count": "158", "contig_count": "158", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003263785.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4934", "protein_coding_gene_count": "3841", "non_coding_gene_count": "87", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-25", "dateModified": "2018-06-25", "datePublished": "2018-06-25", "_annotation": { "sample_count": 1, 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variabilis", "strain": "strain=CAIM 1454", "accession": "GCA_003263785.1", "taxid": 990271, "species_taxid": 990271, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1620, "total_fragments": 1630, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio hangzhouensis", "strain": "strain=CGMCC 1.7062", "accession": "GCA_900107935.1", "taxid": 462991, "species_taxid": 462991, "relation_to_type": "type", "validated": true, "ani": 82.3439, "matched_fragments": 666, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio mediterranei", "strain": "", "accession": "GCA_900088415.1", "taxid": 689, "species_taxid": 689, "relation_to_type": "type", "validated": true, "ani": 81.8091, "matched_fragments": 717, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio mediterranei", "strain": "strain=NBRC 15635", "accession": "GCA_001591125.1", "taxid": 689, "species_taxid": 689, "relation_to_type": "type", "validated": true, "ani": 81.7505, "matched_fragments": 708, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio barjaei", "strain": "strain=3062", "accession": "GCA_001639065.2", "taxid": 1676683, "species_taxid": 1676683, "relation_to_type": "type", "validated": true, "ani": 81.6436, "matched_fragments": 687, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio thalassae", "strain": "strain=CECT8203", "accession": "GCA_900089835.1", "taxid": 1243014, "species_taxid": 1243014, "relation_to_type": "type", "validated": true, "ani": 81.4053, "matched_fragments": 643, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio pelagius", "strain": "strain=ATCC 25916", "accession": "GCA_024347575.1", "taxid": 28169, "species_taxid": 28169, "relation_to_type": "type", "validated": true, 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95, "status": "below_threshold" }, { "organism_name": "Vibrio celticus", "strain": "strain=CECT 7224", "accession": "GCA_024347335.1", "taxid": 446372, "species_taxid": 446372, "relation_to_type": "type", "validated": true, "ani": 79.832, "matched_fragments": 378, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio mexicanus", "strain": "strain=CAIM 1540", "accession": "GCA_001012815.1", "taxid": 1004326, "species_taxid": 1004326, "relation_to_type": "type", "validated": true, "ani": 79.8071, "matched_fragments": 345, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio parahaemolyticus", "strain": "strain=NCTC10903", "accession": "GCA_900460535.1", "taxid": 670, "species_taxid": 670, "relation_to_type": "type", "validated": true, "ani": 79.6086, "matched_fragments": 378, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio 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"GCA_008830195.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 79.5051, "matched_fragments": 310, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=JCM 19500", "accession": "GCA_009938205.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 79.3958, "matched_fragments": 312, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio vulnificus", "strain": "strain=ATCC 27562", "accession": "GCA_000299635.1", "taxid": 672, "species_taxid": 672, "relation_to_type": "suspected-type", "validated": true, "ani": 79.0273, "matched_fragments": 273, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003263785.1", 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