{ "type": "genome", "identifier": "GCF_003264365.1", "organism": "Micromonospora noduli", "title": "Micromonospora noduli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universidad de Salamanca", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003264365.1", "bioproject": "PRJNA224116", "biosample": "SAMN08689786", "wgs_master": "PYAK00000000.1", "refseq_category": "na", "taxid": "709876", "species_taxid": "709876", "organism_name": "Micromonospora noduli", "infraspecific_name": "strain=GUI43", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/25", "asm_name": "ASM326436v1", "asm_submitter": "Universidad de Salamanca", "gbrs_paired_asm": "GCA_003264365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/264/365/GCF_003264365.1_ASM326436v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7205615", "genome_size_ungapped": "7205615", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "224", "contig_count": "224", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003264365.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "6683", "protein_coding_gene_count": "6491", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-25", "dateModified": "2018-06-25", "datePublished": "2018-06-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora noduli" ], "sample_taxid": [ "709876" ], "sample_host_organism": [ "Pisum sativum" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain: Canizal, Zamora" ], "sample_host_location_id": [], "data_size": "1.941 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7205615", "Number of Sequences": "224", "Longest Sequences (bp)": "333724", "N50 (bp)": "105196", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.9", "Number of CDSs": "6556", "Average Protein Length": "321.6", "Coding Ratio (%)": "87.8", "Number of rRNAs": "3", "Number of tRNAs": "77", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora noduli", "strain": "strain=GUI43", "accession": "GCA_003264365.1", "taxid": 709876, "species_taxid": 709876, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2323, "total_fragments": 2325, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Micromonospora saelicesensis", "strain": "strain=DSM 44871", "accession": "GCA_900091575.1", "taxid": 285676, "species_taxid": 285676, "relation_to_type": "type", "validated": true, "ani": 96.622, "matched_fragments": 2086, "total_fragments": 2325, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Micromonospora arida", "strain": "strain=LB32", "accession": "GCA_003857035.1", "taxid": 2203715, "species_taxid": 2203715, "relation_to_type": "type", "validated": true, "ani": 95.7792, "matched_fragments": 1825, "total_fragments": 2325, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Micromonospora vinacea", "strain": "strain=DSM 101695", "accession": "GCA_015751785.1", "taxid": 709878, "species_taxid": 709878, "relation_to_type": "type", "validated": true, "ani": 94.5006, "matched_fragments": 2023, "total_fragments": 2325, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ureilytica", "strain": "strain=DSM 101692", "accession": "GCA_015751765.1", "taxid": 709868, "species_taxid": 709868, "relation_to_type": "type", "validated": true, "ani": 93.8797, "matched_fragments": 1907, "total_fragments": 2325, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora inaquosa", "strain": "strain=LB39", "accession": "GCA_003857055.1", "taxid": 2203716, "species_taxid": 2203716, "relation_to_type": "type", "validated": true, "ani": 92.9669, "matched_fragments": 1738, "total_fragments": 2325, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora violae", "strain": "strain=DSM 45888", "accession": "GCA_004217135.1", "taxid": 1278207, "species_taxid": 1278207, "relation_to_type": "type", "validated": true, "ani": 92.5551, "matched_fragments": 1889, "total_fragments": 2325, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora jinlongensis", "strain": "strain=DSM 45876", "accession": "GCA_013410645.1", "taxid": 1287877, "species_taxid": 1287877, "relation_to_type": "type", "validated": true, "ani": 91.0422, "matched_fragments": 1816, "total_fragments": 2325, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 88.955, "matched_fragments": 1558, "total_fragments": 2325, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 85.3848, "matched_fragments": 1144, "total_fragments": 2325, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", 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