# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_8	LOCUS_00030	sequence004:428..>2471(-)	internal_stop_codon	1746..1748(-),1647..1649(-),1953..1955(-),1542..1544(-)		WP_010886090.1	PE family protein	11.8	9.1	48.8
MGA_9	LOCUS_00040	sequence005:1..1115(+)	partial			WP_010886118.1	PE family protein	71.9	35.9	28.2
MGA_12	LOCUS_00060	sequence006:205..>2377(-)	frameshift,internal_stop_codon	588..590(-)	576,582,555,561,564,824,570,573,575	WP_010950415.1	PE family protein	16.6	9.2	31.7
MGA_15	LOCUS_00080	sequence007:615..>1703(-)	partial			WP_010886098.1	PecA family PE domain-processing aspartic protease	79.8	31.3	95.8
MGA_22	LOCUS_00110	sequence011:1..2094(+)	partial			WP_010950571.1	type I polyketide synthase	99.7	32.7	94.7
MGA_28	LOCUS_00170	sequence011:13987..14697(-)	frameshift		14714,14566,14711	WP_003408257.1	ATP-binding cassette domain-containing protein	100.0	39.9	94.1
MGA_29	LOCUS_00180	sequence011:14634..15752(-)	frameshift		14714,14548,14711	WP_003408257.1	ATP-binding cassette domain-containing protein	93.3	58.7	100.0
MGA_114	LOCUS_01030	sequence011:101751..101957(+)	frameshift		101803	WP_013223398.1	Gfo/Idh/MocA family oxidoreductase	73.5	15.3	70.0
MGA_244	LOCUS_02110	sequence029:1..438(-)	partial			WP_003898701.1	IS5 family transposase	100.0	50.5	99.3
MGA_249	LOCUS_02140	sequence032:1..873(+)	partial			WP_003905649.1	PE family protein	33.8	15.9	46.9
MGA_299	LOCUS_02640	sequence033:57781..58206(-)	frameshift		58313	WP_211695697.1	TVP38/TMEM64 family protein	60.3	36.2	82.4
MGA_304	LOCUS_02690	sequence033:61648..61890(-)	partial			WP_003411866.1	DUF1918 domain-containing protein	73.8	73.8	96.6
MGA_316	LOCUS_02810	sequence033:72589..72822(-)	partial			WP_003900493.1	lipoprotein LpqH	100.0	45.0	98.7
MGA_330	LOCUS_02920	sequence036:1..743(+)	partial			WP_010950372.1	PE family protein	29.3	8.2	66.7
MGA_331	LOCUS_02930	sequence037:2..667(+)	partial			WP_003900518.1	IS110 family transposase	100.0	66.4	100.0
MGA_396	LOCUS_03500	sequence044:62797..63009(-)	partial			WP_003895017.1	(2Fe-2S)-binding protein	72.9	73.9	54.9
MGA_409	LOCUS_03630	sequence044:75486..76046(-)	frameshift		75488	WP_003409492.1	DUF4389 domain-containing protein	100.0	77.8	90.9
MGA_411	LOCUS_03650	sequence044:76628..76984(-)	frameshift		76585,76411,76630	WP_101528280.1	class I SAM-dependent methyltransferase	100.0	38.2	69.5
MGA_421	LOCUS_03750	sequence044:83181..83696(-)	partial			WP_003905677.1	macro domain-containing protein	100.0	49.9	97.1
MGA_499	LOCUS_04430	sequence054:70040..70774(-)	partial			WP_003419207.1	NHL repeat-containing protein	100.0	71.1	97.5
MGA_520	LOCUS_04540	sequence065:1..3868(+)	partial			WP_003414837.1	phthiocerol type I polyketide synthase PpsC	100.0	58.9	97.3
MGA_527	LOCUS_04610	sequence065:17997..21812(-)	frameshift		21847	WP_003899551.1	mycocerosate synthase	99.1	59.7	96.3
MGA_528	LOCUS_04620	sequence065:21806..24334(-)	frameshift		21841	WP_003899551.1	mycocerosate synthase	99.0	39.5	97.2
MGA_533	LOCUS_04670	sequence065:31742..32125(+)	partial			WP_003414867.1	ATP-binding protein	100.0	53.4	99.2
MGA_566	LOCUS_05000	sequence065:72977..73231(-)	frameshift		72985	WP_003902383.1	DAK2 domain-containing protein	78.6	11.9	100.0
MGA_650	LOCUS_05700	sequence075:72974..>74692(-)	partial			WP_010950570.1	PE domain-containing protein	85.7	48.1	65.9
MGA_682	LOCUS_06010	sequence076:29956..30252(-)	partial			WP_003413930.1	dUTP diphosphatase	81.6	51.9	91.2
MGA_705	LOCUS_06240	sequence076:47313..47603(-)	partial			WP_003899446.1	LysM peptidoglycan-binding domain-containing protein	100.0	58.2	93.8
MGA_740	LOCUS_06570	sequence077:14190..14522(-)	partial			WP_003405142.1	zinc ribbon domain-containing protein	62.7	62.7	100.0
MGA_747	LOCUS_06640	sequence077:20404..20736(-)	internal_stop_codon	20404..20406(-)		WP_175048406.1	methyltransferase domain-containing protein	60.0	28.8	47.0
MGA_765	LOCUS_06820	sequence077:40803..41264(-)	partial			WP_003898691.1	LpqN/LpqT family lipoprotein	100.0	67.7	99.3
MGA_785	LOCUS_07020	sequence077:64936..65427(-)	frameshift		65416	WP_057003513.1	ISNCY family transposase	96.9	33.0	81.0
MGA_786	LOCUS_07030	sequence077:65393..66079(-)	frameshift,internal_stop_codon	66113..66115(-)	65419	WP_085251832.1	ISNCY family transposase	98.7	47.0	66.7
MGA_787	LOCUS_07040	sequence077:66113..66451(-)	internal_stop_codon	66113..66115(-)		WP_057003513.1	ISNCY family transposase	77.7	18.2	80.5
MGA_791	LOCUS_07070	sequence078:1543..1791(+)	partial			WP_003899953.1	type II toxin-antitoxin system Phd/YefM family antitoxin	100.0	54.7	84.1
MGA_801	LOCUS_07170	sequence078:10315..10494(+)	frameshift		10330	WP_010948162.1	hypothetical protein	89.8	41.7	50.9
MGA_814	LOCUS_07300	sequence078:22160..24091(+)	partial			WP_003906993.1	PPE family protein	41.7	45.4	82.5
MGA_853	LOCUS_07690	sequence078:62419..62745(-)	partial			WP_003901547.1	hypothetical protein	100.0	65.9	95.4
MGA_926	LOCUS_08400	sequence079:83659..84525(-)	partial			WP_003916225.1	L,D-transpeptidase LdtMt4	88.2	69.4	99.2
MGA_967	LOCUS_08810	sequence079:127294..127518(+)	frameshift		127515	WP_010950355.1	PE-PPE domain-containing protein	100.0	14.7	45.9
MGA_969	LOCUS_08830	sequence079:127865..129004(+)	partial			WP_003401003.1	PE-PPE domain-containing protein	100.0	72.2	96.6
MGA_998	LOCUS_09120	sequence079:157327..158070(-)	partial			WP_010886091.1	PE family protein	47.8	19.5	93.2
MGA_1007	LOCUS_09210	sequence079:166904..167191(+)	partial			WP_003404606.1	MarR family transcriptional regulator	100.0	66.4	100.0
MGA_1019	LOCUS_09330	sequence079:180424..180963(-)	partial			WP_010886093.1	adenylate/guanylate cyclase domain-containing protein	100.0	62.8	100.0
MGA_1029	LOCUS_09430	sequence079:191631..191783(+)	partial			WP_003404687.1	hypothetical protein	70.0	70.0	100.0
MGA_1049	LOCUS_09630	sequence079:212227..212514(+)	partial			WP_003404754.1	DUF1778 domain-containing protein	100.0	60.1	100.0
MGA_1078	LOCUS_09920	sequence079:245473..245745(-)	partial			WP_003404838.1	chorismate mutase	86.7	74.3	100.0
MGA_1087	LOCUS_10010	sequence079:255568..256035(+)	partial			WP_003898661.1	phosphoribosylglycinamide formyltransferase	100.0	72.1	89.7
MGA_1112	LOCUS_10250	sequence080:3904..4323(-)	partial			WP_003414195.1	hypothetical protein	100.0	68.8	89.2
MGA_1113	LOCUS_10260	sequence080:4743..4910(+)	partial			WP_011014093.1	ISL3-like element IS31831 family transposase	100.0	12.6	63.6
MGA_1119	LOCUS_10320	sequence080:7995..8186(+)	partial			WP_003899487.1	hypothetical protein	100.0	30.1	98.4
MGA_1145	LOCUS_10580	sequence080:34041..34436(+)	partial			WP_003899476.1	Lrp/AsnC family transcriptional regulator	100.0	73.2	100.0
MGA_1181	LOCUS_10940	sequence080:64636..64845(-)	partial			WP_003414015.1	epoxide hydrolase	95.7	48.3	40.3
MGA_1184	LOCUS_10960	sequence081:1152..1925(-)	partial			WP_009935184.1	polyprenyl synthetase family protein	100.0	73.4	95.7
MGA_1189	LOCUS_11010	sequence081:5368..6807(+)	partial			WP_010886168.1	PE family protein	30.5	20.0	82.9
MGA_1202	LOCUS_11140	sequence081:19078..19767(+)	frameshift		19665,19833	WP_211696200.1	carboxylesterase/lipase family protein	84.3	38.4	81.5
MGA_1203	LOCUS_11150	sequence081:19841..20239(+)	frameshift		19665,20070,19833	WP_211696200.1	carboxylesterase/lipase family protein	59.8	15.2	91.1
MGA_1204	LOCUS_11160	sequence081:20193..20603(+)	frameshift		20594,20068	WP_211696200.1	carboxylesterase/lipase family protein	99.3	25.9	84.4
MGA_1212	LOCUS_11240	sequence081:27205..27390(+)	partial			WP_003405863.1	type II toxin-antitoxin system VapB family antitoxin	73.8	69.2	97.8
MGA_1237	LOCUS_11490	sequence081:52383..52724(+)	frameshift,internal_stop_codon	52723..52725(+)	52969,52870,52728,52777,52365	WP_011730375.1	crotonase/enoyl-CoA hydratase family protein	98.2	42.0	72.1
MGA_1248	LOCUS_11600	sequence081:61042..62544(+)	frameshift		61027	WP_003405970.1	MMPL family transporter	100.0	64.0	94.6
MGA_1251	LOCUS_11630	sequence081:64077..>64842(-)	partial			WP_003898743.1	HNH endonuclease signature motif containing protein	100.0	55.9	100.0
MGA_1254	LOCUS_11660	sequence082:2298..2900(+)	partial			WP_003899726.1	DUF4328 domain-containing protein	100.0	58.5	92.5
MGA_1271	LOCUS_11830	sequence082:16902..18113(-)	partial			WP_003899713.1	long-chain-fatty-acid--CoA ligase FadD23	100.0	69.0	99.0
MGA_1303	LOCUS_12150	sequence083:1170..1463(+)	frameshift		1358	WP_010950737.1	DUF2652 domain-containing protein	67.0	26.5	100.0
MGA_1304	LOCUS_12160	sequence083:1402..1908(+)	frameshift		1358	WP_010950737.1	DUF2652 domain-containing protein	100.0	68.6	99.4
MGA_1333	LOCUS_12450	sequence083:41312..42943(+)	partial			WP_010950748.1	PE family protein	27.8	27.7	82.1
MGA_1341	LOCUS_12530	sequence083:46945..47241(+)	partial			WP_003413444.1	DUF2617 family protein	100.0	59.8	99.0
MGA_1343	LOCUS_12550	sequence083:47751..48152(+)	internal_stop_codon	47700..47702(+)		WP_003413451.1	DUF350 domain-containing protein	88.0	77.0	95.7
MGA_1364	LOCUS_12740	sequence084:4280..4513(-)	frameshift,internal_stop_codon	4550..4552(-)	4504,4371,4606	WP_010908684.1	hydrogen peroxide-inducible genes activator	61.0	15.1	72.3
MGA_1407	LOCUS_13170	sequence084:54505..54969(+)	partial			WP_003412695.1	hypothetical protein	96.1	62.2	98.0
MGA_1422	LOCUS_13310	sequence085:4363..5406(-)	partial			WP_003406066.1	hypothetical protein	41.2	38.5	100.0
MGA_1465	LOCUS_13740	sequence085:62666..>63256(-)	partial			WP_003901078.1	IS256-like element IS1081 family transposase	100.0	47.2	100.0
MGA_1475	LOCUS_13840	sequence086:8016..8213(-)	internal_stop_codon	8016..8018(-)		WP_003900903.1	class I SAM-dependent methyltransferase	100.0	29.5	100.0
MGA_1503	LOCUS_14120	sequence086:37170..38870(-)	partial			WP_010886074.1	PE family protein	20.5	19.6	70.7
MGA_1568	LOCUS_14750	sequence087:46266..47111(-)	partial			WP_085095815.1	IS256 family transposase	98.9	67.6	90.6
MGA_1582	LOCUS_14870	sequence088:966..1265(-)	frameshift		968	WP_010886180.1	apoptosis inhibitor	100.0	79.2	86.9
MGA_1618	LOCUS_15230	sequence088:36445..37677(+)	partial			WP_003899640.1	hypothetical protein	81.5	74.1	84.4
MGA_1650	LOCUS_15540	sequence089:12375..12560(+)	partial			WP_010886067.1	PE family protein	91.8	11.3	66.1
MGA_1714	LOCUS_16170	sequence090:37910..38659(+)	partial			WP_003898475.1	DUF2993 domain-containing protein	100.0	71.6	97.6
MGA_1791	LOCUS_16940	sequence090:120846..121841(-)	partial			WP_003402078.1	fatty-acid--AMP ligase FAAL30/FadD30	100.0	56.6	100.0
MGA_1802	LOCUS_17050	sequence090:132474..133466(-)	partial			WP_003401938.1	HNH endonuclease signature motif containing protein	96.4	72.1	94.3
MGA_1803	LOCUS_17060	sequence090:133475..133666(-)	frameshift		133492	WP_003898492.1	HNH endonuclease signature motif containing protein	90.5	11.3	68.4
MGA_1841	LOCUS_17440	sequence090:181882..182439(+)	frameshift		181778,181781,181766,181790	WP_014000186.1	PPE domain-containing protein	100.0	5.3	95.7
MGA_1854	LOCUS_17570	sequence090:195782..196027(-)	partial			WP_003901837.1	isoniazid-induced protein IniB	100.0	16.9	96.3
MGA_1867	LOCUS_17690	sequence091:11631..12566(+)	partial			WP_003406584.1	exonuclease SbcCD subunit D	93.6	69.8	99.3
MGA_1881	LOCUS_17830	sequence091:30366..30521(+)	partial			WP_003406628.1	hypothetical protein	100.0	49.0	98.0
MGA_1981	LOCUS_18820	sequence093:25920..26870(-)	partial			WP_003412968.1	ERCC4 domain-containing protein	100.0	68.3	98.7
MGA_1998	LOCUS_18990	sequence093:49109..49309(+)	partial			WP_003899362.1	DUF4411 family protein	100.0	43.1	100.0
MGA_2012	LOCUS_19120	sequence094:12674..13501(+)	frameshift		13438	WP_003403107.1	MlaD family protein	92.7	74.3	97.6
MGA_2013	LOCUS_19130	sequence094:13450..13704(+)	frameshift		13435	WP_003403107.1	MlaD family protein	100.0	24.5	94.0
MGA_2021	LOCUS_19210	sequence094:21662..21835(+)	partial			WP_011727542.1	3'-5' exonuclease	63.2	4.9	86.1
MGA_2030	LOCUS_19300	sequence094:26658..27401(+)	partial			WP_083165449.1	IS607 family element RNA-guided endonuclease TnpB	96.0	51.5	88.2
MGA_2043	LOCUS_19430	sequence094:36280..36873(+)	frameshift		36834	WP_015287872.1	galactose-1-phosphate uridylyltransferase	93.9	51.4	97.8
MGA_2044	LOCUS_19440	sequence094:36891..37361(+)	frameshift		36834	WP_015287872.1	galactose-1-phosphate uridylyltransferase	100.0	43.3	98.7
MGA_2071	LOCUS_19700	sequence095:13086..13364(+)	frameshift		12994,13319	WP_011727413.1	GlxA family transcriptional regulator	85.9	23.6	87.3
MGA_2072	LOCUS_19710	sequence095:13361..13591(+)	partial			WP_003899087.1	helix-turn-helix domain-containing protein	100.0	29.3	100.0
MGA_2089	LOCUS_19880	sequence095:33145..34455(-)	frameshift		34562	WP_003409584.1	isocitrate lyase ICL2	100.0	56.9	98.2
MGA_2101	LOCUS_20000	sequence095:44522..44827(-)	partial			WP_003409543.1	anti-sigma factor antagonist	100.0	70.6	99.0
MGA_2115	LOCUS_20130	sequence096:6730..7224(-)	partial			WP_010886087.1	hypothetical protein	100.0	51.4	100.0
MGA_2121	LOCUS_20190	sequence096:12758..14293(-)	frameshift		14312	WP_003898586.1	S9 family peptidase	100.0	71.1	98.4
MGA_2122	LOCUS_20200	sequence096:14205..14915(-)	frameshift		14312	WP_003898586.1	S9 family peptidase	87.3	28.7	97.6
MGA_2148	LOCUS_20460	sequence096:38636..38806(+)	partial			WP_083125798.1	IS481 family transposase	85.7	12.0	95.8
MGA_2150	LOCUS_20480	sequence096:41235..42989(-)	partial			WP_003403850.1	phosphoglycerate mutase PE_PGRS11	56.7	56.7	92.7
MGA_2198	LOCUS_20950	sequence097:40357..42003(-)	frameshift		40209	WP_003911223.1	hypothetical protein	74.5	74.5	85.5
MGA_2206	LOCUS_21010	sequence098:932..1147(-)	frameshift,internal_stop_codon	929..931(-)	1153,697,748,1198,1231	WP_087902221.1	IS3-like element IS987 family transposase	100.0	17.6	44.0
MGA_2207	LOCUS_21020	sequence098:1608..1796(+)	partial			WP_003899012.1	metal-sensitive transcriptional regulator	77.4	53.9	87.5
MGA_2209	LOCUS_21040	sequence098:2404..3003(+)	partial			WP_003905649.1	PE family protein	65.8	21.2	82.4
MGA_2231	LOCUS_21260	sequence098:30880..31056(+)	internal_stop_codon	31054..31056(+)		WP_003405345.1	type VII secretion system ESX-5 protein EsxJ	100.0	59.2	100.0
MGA_2232	LOCUS_21270	sequence098:31057..31176(+)	internal_stop_codon	31054..31056(+)		WP_003408810.1	type VII secretion system ESX-5 protein EsxJ	100.0	39.8	100.0
MGA_2243	LOCUS_21380	sequence098:45456..46634(-)	partial			WP_003910446.1	PE family protein	68.4	41.9	34.0
MGA_2245	LOCUS_21400	sequence099:115..585(-)	partial			WP_010886114.1	PE family protein	75.6	20.5	78.0
MGA_2251	LOCUS_21460	sequence099:3745..4260(+)	partial			WP_003898862.1	lysoplasmalogenase	100.0	65.5	96.5
MGA_2263	LOCUS_21570	sequence099:15927..16229(+)	frameshift		16097,16100	WP_003863093.1	D-TA family PLP-dependent enzyme	53.0	15.5	66.0
MGA_2285	LOCUS_21790	sequence099:39070..39669(-)	partial			WP_010886115.1	hypothetical protein	29.1	28.7	87.9
MGA_2323	LOCUS_22160	sequence100:30359..31426(-)	partial			WP_003916796.1	lytic transglycosylase domain-containing protein	86.8	74.9	97.1
MGA_2424	LOCUS_23160	sequence101:88867..89367(+)	partial			WP_003416963.1	ComF family protein	88.0	68.5	97.3
MGA_2433	LOCUS_23250	sequence101:100554..101156(+)	frameshift		100545	WP_003416930.1	wax ester/triacylglycerol synthase family O-acyltransferase	100.0	42.6	99.5
MGA_2451	LOCUS_23430	sequence101:117085..117417(-)	frameshift		117499	WP_015288476.1	GNAT family N-acetyltransferase	100.0	68.8	94.5
MGA_2458	LOCUS_23500	sequence101:124104..124505(-)	partial			WP_003416868.1	MmpS family transport accessory protein	71.4	51.1	100.0
MGA_2459	LOCUS_23510	sequence101:124968..125261(+)	partial			WP_003416863.1	DUF3107 domain-containing protein	63.9	68.9	98.4
MGA_2475	LOCUS_23670	sequence101:144250..144882(-)	partial			WP_003416809.1	hypothetical protein	100.0	70.2	97.1
MGA_2490	LOCUS_23820	sequence101:156912..>157897(-)	partial			WP_087902221.1	IS3-like element IS987 family transposase	95.1	74.0	100.0
MGA_2491	LOCUS_23830	sequence102:1..1167(+)	frameshift,internal_stop_codon	296..298(+),1250..1252(+),797..799(+)	277	WP_010886091.1	PE family protein	58.5	37.5	32.2
MGA_2522	LOCUS_24140	sequence102:32502..33134(+)	partial			WP_003404376.1	proline iminopeptidase-family hydrolase	100.0	73.4	99.5
MGA_2562	LOCUS_24530	sequence103:33234..33878(+)	partial			WP_003415107.1	DNA-binding protein HupB	46.7	46.7	98.0
MGA_2564	LOCUS_24550	sequence103:34972..36531(-)	partial			WP_003415097.1	RNA degradosome polyphosphate kinase	100.0	69.9	96.3
MGA_2599	LOCUS_24890	sequence105:1619..2098(-)	partial			WP_003410086.1	IS110 family transposase	90.6	69.9	99.3
MGA_2609	LOCUS_24990	sequence105:13306..13503(+)	partial			WP_005629687.1	phosphoenolpyruvate synthase	86.2	7.3	66.1
MGA_2634	LOCUS_25240	sequence105:34843..>36048(-)	frameshift		34578	WP_010950639.1	PecA family PE domain-processing aspartic protease	75.1	53.9	97.0
MGA_2636	LOCUS_25250	sequence106:335..541(-)	frameshift		143,345,562,655	WP_010886147.1	PE family protein	92.6	3.8	46.0
MGA_2648	LOCUS_25370	sequence106:9268..9576(-)	partial			WP_003411107.1	hypothetical protein	81.4	60.6	100.0
MGA_2657	LOCUS_25460	sequence106:15787..16401(+)	partial			WP_003411129.1	phosphoribosyltransferase family protein	100.0	58.0	96.1
MGA_2662	LOCUS_25510	sequence106:19206..19754(-)	partial			WP_003411137.1	YggS family pyridoxal phosphate-dependent enzyme	98.4	69.4	100.0
MGA_2674	LOCUS_25630	sequence106:34028..34369(-)	frameshift		34338	WP_003411199.1	TetR/AcrR family transcriptional regulator	85.8	47.1	94.8
MGA_2691	LOCUS_25790	sequence107:17073..17573(-)	frameshift		17632	WP_014001845.1	IS21 family transposase	100.0	40.4	98.8
MGA_2692	LOCUS_25800	sequence107:17958..18305(-)	frameshift		17975	WP_014001845.1	IS21 family transposase	95.7	26.8	99.1
MGA_2715	LOCUS_26020	sequence108:4077..4493(-)	partial			WP_003900449.1	type II toxin-antitoxin system RelE/ParE family toxin	100.0	68.7	99.3
MGA_2742	LOCUS_26290	sequence108:31489..>32379(-)	partial			WP_010886138.1	type I polyketide synthase	100.0	7.1	98.0
MGA_2757	LOCUS_26430	sequence109:14587..14739(+)	partial			WP_003410651.1	type II toxin-antitoxin system antitoxin MazE7	100.0	64.9	100.0
MGA_2778	LOCUS_26640	sequence109:31597..31863(+)	partial			WP_010950655.1	DUF5631 domain-containing protein	61.4	7.5	90.7
MGA_2804	LOCUS_26890	sequence110:21994..22335(-)	partial			WP_003899099.1	hypothetical protein	100.0	68.9	91.2
MGA_2817	LOCUS_27020	sequence110:27122..27625(+)	partial			WP_003409874.1	hypothetical protein	100.0	55.7	91.0
MGA_2821	LOCUS_27060	sequence110:29347..>30112(-)	partial			WP_003899094.1	HNH endonuclease signature motif containing protein	100.0	55.9	92.5
MGA_2822	LOCUS_27070	sequence111:1..880(+)	partial			WP_010886110.1	serine/threonine protein kinase PknH	100.0	46.6	91.1
MGA_2846	LOCUS_27310	sequence111:28163..29218(+)	partial			WP_003910308.1	PE family protein	33.6	21.0	77.1
MGA_2858	LOCUS_27430	sequence112:7988..8443(-)	internal_stop_codon	8401..8403(-)		WP_010886122.1	phage protein	88.7	80.7	93.3
MGA_2884	LOCUS_27690	sequence112:34605..35036(-)	frameshift		34622	WP_041180066.1	fatty acid--CoA ligase FadD11	97.2	22.9	95.0
MGA_2909	LOCUS_27940	sequence112:69946..70698(-)	partial			WP_003407670.1	class I SAM-dependent methyltransferase	100.0	72.0	99.6
MGA_2930	LOCUS_28150	sequence112:93498..94097(+)	internal_stop_codon	94095..94097(+)		WP_010950550.1	dTDP-4-amino-4,6-dideoxygalactose transaminase	100.0	52.1	100.0
MGA_2931	LOCUS_28160	sequence112:94206..94646(+)	internal_stop_codon	94095..94097(+)		WP_010950550.1	dTDP-4-amino-4,6-dideoxygalactose transaminase	100.0	38.2	98.6
MGA_2941	LOCUS_28260	sequence112:102069..102317(-)	partial			WP_003900349.1	type II toxin-antitoxin system antitoxin MazE4	73.2	60.0	93.3
MGA_2969	LOCUS_28540	sequence112:131921..133033(+)	partial			WP_003407494.1	PE family protein	37.3	37.3	81.9
MGA_3002	LOCUS_28860	sequence113:20769..21086(+)	partial			WP_003898857.1	integration host factor, actinobacterial type	100.0	55.3	86.7
MGA_3010	LOCUS_28940	sequence114:1..4004(+)	frameshift,internal_stop_codon	4072..4074(+),3634..3636(+),3722..3724(+),2479..2481(+),4006..4008(+),2413..2415(+),4198..4200(+),3721..3723(+),3751..3753(+),3919..3921(+),4282..4284(+),2794..2796(+),3757..3759(+)	4104,3913,3723,1869,2061,2958,3471,3768,3981,3219,3858,3929,3741,4125,3743,3744,2592,3746,1574,3696,1464,2106,3707,4221	WP_010886165.1	PE family protein	7.7	6.6	47.1
MGA_3018	LOCUS_29020	sequence114:15886..16518(-)	frameshift		16529	WP_044081650.1	alpha/beta hydrolase	100.0	76.9	99.5
MGA_3047	LOCUS_29300	sequence115:11582..13384(+)	partial			WP_010886167.1	PE family protein	24.8	25.3	81.9
MGA_3054	LOCUS_29370	sequence115:21421..21666(+)	internal_stop_codon	21415..21417(+)		WP_198408425.1	enoyl-CoA hydratase/isomerase family protein	100.0	30.1	96.3
MGA_3114	LOCUS_29940	sequence118:12060..12317(+)	partial			WP_003401383.1	type II toxin-antitoxin system prevent-host-death family antitoxin	100.0	50.3	94.1
MGA_3146	LOCUS_30240	sequence119:21728..22213(+)	partial			WP_003911027.1	PE family protein	85.1	31.2	83.2
MGA_3148	LOCUS_30250	sequence120:931..1800(-)	partial			WP_003899735.1	FHA domain-containing protein	100.0	73.7	88.6
MGA_3150	LOCUS_30270	sequence120:3009..3884(-)	partial			WP_003399818.1	MinD/ParA family protein	100.0	74.6	99.0
MGA_3201	LOCUS_30750	sequence123:646..1092(+)	partial			WP_003899809.1	zf-HC2 domain-containing protein	100.0	52.5	98.0
MGA_3237	LOCUS_31110	sequence123:38668..38895(+)	partial			WP_003899794.1	hypothetical protein	100.0	67.0	88.0
MGA_3268	LOCUS_31420	sequence123:70753..71571(-)	internal_stop_codon	70914..70916(-)		WP_003400411.1	DUF5631 domain-containing protein	100.0	74.5	97.1
MGA_3295	LOCUS_31670	sequence123:93079..93717(-)	partial			WP_003400291.1	DUF3566 domain-containing protein	100.0	69.7	87.3
MGA_3299	LOCUS_31710	sequence123:98910..99203(-)	partial			WP_010950322.1	DNA replication protein DciA	100.0	51.9	99.0
MGA_3324	LOCUS_31960	sequence123:128720..129073(+)	partial			WP_010950962.1	hypothetical protein	91.5	71.8	75.7
MGA_3364	LOCUS_32330	sequence125:97..867(+)	frameshift,internal_stop_codon	632..634(+),95..97(+),629..631(+),461..463(+),719..721(+)	121,180,189,175	WP_003911763.1	DUF5631 domain-containing protein	100.0	35.5	92.6
MGA_3379	LOCUS_32480	sequence125:16665..>17488(-)	partial			WP_003410786.1	PE family protein	79.5	44.0	34.6
MGA_3382	LOCUS_32500	sequence126:1068..1250(-)	partial			WP_003400865.1	hypothetical protein	100.0	49.2	98.3
MGA_3420	LOCUS_32840	sequence128:3221..3403(+)	partial			WP_003404135.1	DUF3073 domain-containing protein	63.3	63.3	100.0
MGA_3436	LOCUS_33000	sequence129:2496..3827(-)	frameshift		3861	WP_010950891.1	allantoin permease	98.4	77.7	98.4
MGA_3437	LOCUS_33010	sequence129:3850..4182(-)	frameshift		3861	WP_010950891.1	allantoin permease	97.3	19.1	100.0
MGA_3450	LOCUS_33140	sequence130:2..415(-)	partial			WP_014000452.1	PE family protein PE_PGRS12, long form	86.1	12.9	76.3
MGA_3453	LOCUS_33170	sequence130:3501..3863(-)	partial			WP_003899524.1	IS607 family element RNA-guided endonuclease TnpB	77.5	20.2	94.6
MGA_3467	LOCUS_33310	sequence131:1..672(+)	partial			WP_010886147.1	PE family protein	83.4	11.2	26.3
MGA_3469	LOCUS_33330	sequence131:4541..6625(+)	partial			WP_003910913.1	PE family protein	18.3	18.3	89.0
MGA_3495	LOCUS_33570	sequence133:18..4301(-)	partial			WP_003900387.1	type I polyketide synthase	97.5	65.4	95.9
MGA_3505	LOCUS_33670	sequence133:14223..15389(+)	partial			WP_010886125.1	PE domain-containing protein	32.2	12.4	88.0
MGA_3531	LOCUS_33920	sequence134:23419..26121(-)	partial			WP_003899505.1	translation initiation factor IF-2	69.9	69.9	98.3
MGA_3544	LOCUS_34050	sequence134:40462..42309(+)	partial			WP_010886155.1	PE family protein	20.7	20.7	92.9
MGA_3548	LOCUS_34090	sequence134:46062..46394(+)	frameshift		46395,46373	WP_011728271.1	hydrogenase nickel incorporation protein HypB	92.7	40.2	63.5
MGA_3568	LOCUS_34290	sequence134:62857..63048(+)	frameshift		63105,63021	WP_003403244.1	type II toxin-antitoxin system Phd/YefM family antitoxin	66.7	48.8	71.4
MGA_3574	LOCUS_34350	sequence134:67777..68364(-)	frameshift		68344	WP_003414658.1	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	96.4	51.6	100.0
MGA_3580	LOCUS_34410	sequence134:73739..74326(-)	partial			WP_003899526.1	IS607 family transposase	87.2	57.6	95.3
MGA_3624	LOCUS_34850	sequence134:122403..123563(+)	partial			WP_003900597.1	long-chain-fatty-acid--AMP ligase FAAL26/FadD26	100.0	66.2	100.0
MGA_3662	LOCUS_35180	sequence137:11194..12594(+)	partial			WP_010886106.1	PE family protein	31.3	31.5	85.6
MGA_3667	LOCUS_35220	sequence139:72..371(-)	partial			WP_003909105.1	type VII secretion system ESX-1 associated protein EspI	81.8	12.2	71.6
MGA_3685	LOCUS_35390	sequence140:5599..5853(+)	partial			WP_003899403.1	hypothetical protein	100.0	70.0	100.0
MGA_3687	LOCUS_35410	sequence140:7473..7865(+)	partial			WP_003413614.1	archease	100.0	72.6	90.0
MGA_3706	LOCUS_35570	sequence142:6503..6811(+)	partial			WP_011729843.1	antitoxin MazE family protein	55.9	82.6	78.9
MGA_3710	LOCUS_35610	sequence143:1..2759(+)	partial			WP_010886158.1	phthiocerol type I polyketide synthase PpsA	100.0	48.9	97.6
MGA_3754	LOCUS_36030	sequence145:27760..28011(-)	partial			WP_003403365.1	ribonuclease VapC6	100.0	65.4	100.0
MGA_3836	LOCUS_36850	sequence145:107310..107624(+)	partial			WP_144955419.1	ISL3 family transposase	100.0	23.4	87.5
MGA_3837	LOCUS_36860	sequence145:107766..108284(+)	partial			WP_003901009.1	PE family protein	62.2	61.1	77.6
MGA_3840	LOCUS_36890	sequence145:109835..109981(-)	partial			WP_003403844.1	3-hydroxyisobutyrate dehydrogenase	93.8	15.3	88.9
MGA_3842	LOCUS_36900	sequence146:165..641(+)	internal_stop_codon	914..916(+),842..844(+),878..880(+)		WP_003901991.1	RDD family protein	100.0	65.8	100.0
MGA_3863	LOCUS_37070	sequence148:7444..8472(-)	partial			WP_003400012.1	type VII secretion system ESX-2 serine protease mycosin MycP2	100.0	62.2	97.4
MGA_3883	LOCUS_37250	sequence152:1..504(+)	partial			WP_003399995.1	type VII secretion system ESX-1 target EspB	100.0	36.3	79.0
MGA_3885	LOCUS_37270	sequence152:1265..3454(+)	frameshift,internal_stop_codon	3258..3260(+),1430..1432(+),1304..1306(+),1205..1207(+)	1026,1411,1255	WP_010886183.1	type VII secretion system ESX-1 associated protein EspK	56.7	56.7	81.1
MGA_3888	LOCUS_37300	sequence152:6037..>6855(-)	partial			WP_003909105.1	type VII secretion system ESX-1 associated protein EspI	100.0	40.8	90.8
MGA_3900	LOCUS_37410	sequence154:5406..5897(+)	partial			WP_010950666.1	PE family protein	71.2	23.7	85.3
MGA_3901	LOCUS_37420	sequence155:1..578(+)	partial			WP_003412795.1	MmpS family transport accessory protein	100.0	70.0	73.8
MGA_3929	LOCUS_37690	sequence156:22327..23226(-)	partial			WP_003411405.1	MmpS family transport accessory protein	48.5	48.5	85.5
MGA_3959	LOCUS_37990	sequence156:61102..61329(+)	frameshift		61326	WP_003411499.1	2OG-Fe(II) oxygenase	100.0	31.8	100.0
MGA_3960	LOCUS_38000	sequence156:61326..61811(+)	partial			WP_003899225.1	2OG-Fe(II) oxygenase	100.0	69.1	99.4
MGA_3972	LOCUS_38120	sequence156:70530..70655(-)	partial			WP_003899229.1	hypothetical protein	100.0	52.6	100.0
MGA_3996	LOCUS_38360	sequence156:94223..94654(-)	frameshift		94746	WP_003901363.1	apolipoprotein N-acyltransferase	100.0	28.5	99.3
MGA_3997	LOCUS_38370	sequence156:94651..95823(-)	frameshift		94746	WP_003901363.1	apolipoprotein N-acyltransferase	84.4	65.5	92.7
MGA_4012	LOCUS_38510	sequence157:2872..4107(-)	partial			WP_003408678.1	DUF4185 domain-containing protein	100.0	73.0	92.5
MGA_4014	LOCUS_38530	sequence157:4747..5568(-)	partial			WP_003900400.1	phospholipase C	100.0	53.1	96.7
MGA_4036	LOCUS_38720	sequence161:1..1318(+)	partial			WP_010886107.1	PE family protein	21.9	12.5	52.1
MGA_4037	LOCUS_38730	sequence161:1504..1815(+)	partial			WP_163757333.1	isoprenyl transferase	59.2	28.0	60.8
MGA_4074	LOCUS_39010	sequence167:20737..21672(-)	frameshift		20766	WP_003420615.1	hypothetical protein	96.8	84.3	98.0
MGA_4089	LOCUS_39160	sequence167:36723..36914(+)	frameshift		37073,36723,36949,36903	WP_144956692.1	DDE-type integrase/transposase/recombinase	100.0	13.5	90.5
MGA_4090	LOCUS_39170	sequence167:36929..37111(+)	frameshift,internal_stop_codon	36913..36915(+)	37073,36723,36949,36918	WP_163760282.1	DDE-type integrase/transposase/recombinase	68.3	8.8	82.9
MGA_4113	LOCUS_39400	sequence167:55041..55364(+)	partial			WP_003899673.1	hypothetical protein	100.0	63.3	97.2
MGA_4123	LOCUS_39500	sequence167:62475..62708(+)	internal_stop_codon	62706..62708(+)		WP_010950814.1	PPE family protein	100.0	17.7	75.3
MGA_4138	LOCUS_39650	sequence167:81778..82011(-)	frameshift		82028	WP_041180327.1	SDR family NAD(P)-dependent oxidoreductase	100.0	23.5	98.7
MGA_4139	LOCUS_39660	sequence167:82823..83386(-)	frameshift		83324	WP_003420425.1	cutinase family protein	88.8	71.2	93.4
MGA_4147	LOCUS_39740	sequence167:92079..92480(+)	partial			WP_003420408.1	YbaB/EbfC family nucleoid-associated protein	69.9	69.9	81.7
MGA_4157	LOCUS_39840	sequence167:103081..103401(+)	partial			WP_003419816.1	hypothetical protein	69.8	69.8	78.4