{ "type": "genome", "identifier": "GCF_003268655.1", "organism": "Arthrobacter dokdonellae", "title": "Arthrobacter dokdonellae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jeju National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003268655.1", "bioproject": "PRJNA224116", "biosample": "SAMN09273369", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2211210", "species_taxid": "2211210", "organism_name": "Arthrobacter dokdonellae", "infraspecific_name": "na", "isolate": "rhizosphere", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/27", "asm_name": "ASM326865v1", "asm_submitter": "Jeju National University", "gbrs_paired_asm": "GCA_003268655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/268/655/GCF_003268655.1_ASM326865v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4530754", "genome_size_ungapped": "4530754", "gc_percent": "66.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-05", "total_gene_count": "4050", "protein_coding_gene_count": "3919", "non_coding_gene_count": "68", "pubmed_id": "31079331" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-27", "dateModified": "2018-06-27", "datePublished": "2018-06-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Arthrobacter dokdonellae" ], "sample_taxid": [ "2211210" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.250 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4530754", "Number of Sequences": "2", "Longest Sequences (bp)": "4359122", "N50 (bp)": "4359122", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.2", "Number of CDSs": "4089", "Average Protein Length": "322.3", "Coding Ratio (%)": "87.3", "Number of rRNAs": "15", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arthrobacter dokdonellae", "strain": "", "accession": "GCA_003268655.1", "taxid": 2211210, "species_taxid": 2211210, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1506, "total_fragments": 1510, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Arthrobacter wenxiniae", "strain": "strain=AETb3-4", "accession": "GCA_013376105.1", "taxid": 2713570, "species_taxid": 2713570, "relation_to_type": "type", "validated": true, "ani": 86.9821, "matched_fragments": 1030, "total_fragments": 1510, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter livingstonensis", "strain": "strain=LI2", "accession": "GCA_003219815.1", "taxid": 670078, "species_taxid": 670078, "relation_to_type": "type", "validated": true, "ani": 84.5275, "matched_fragments": 1024, "total_fragments": 1510, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter silviterrae", "strain": "strain=DSM 27180", "accession": "GCA_011045165.1", "taxid": 2026658, "species_taxid": 2026658, "relation_to_type": "type", "validated": true, "ani": 83.0655, "matched_fragments": 896, "total_fragments": 1510, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter stackebrandtii", "strain": "strain=DSM 16005", "accession": "GCA_017876675.1", "taxid": 272161, "species_taxid": 272161, "relation_to_type": "type", "validated": true, "ani": 81.7908, "matched_fragments": 750, "total_fragments": 1510, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter alpinus", "strain": "strain=DSM 22274", "accession": "GCA_900105965.1", "taxid": 656366, "species_taxid": 656366, "relation_to_type": "suspected-type", "validated": true, "ani": 80.0209, "matched_fragments": 569, "total_fragments": 1510, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter cupressi", "strain": "strain=DSM 24664", "accession": "GCA_013409905.1", "taxid": 1045773, "species_taxid": 1045773, "relation_to_type": "type", "validated": true, "ani": 79.3893, "matched_fragments": 470, "total_fragments": 1510, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003219815.1", "gtdb_species": "s__Specibacter livingstonensis", "ani": 84.5298, "matched_fragments": 1024, "total_fragments": 1510, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Specibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011045165.1", "gtdb_species": "s__Specibacter silviterrae", "ani": 83.0266, "matched_fragments": 900, "total_fragments": 1510, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Specibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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"num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003946885.1", "gtdb_species": "s__Specibacter cremeus", "ani": 80.7086, "matched_fragments": 687, "total_fragments": 1510, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Specibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002929305.1", "gtdb_species": "s__Specibacter sp002929305", "ani": 80.4187, "matched_fragments": 637, "total_fragments": 1510, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Specibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.105, "cell_length": 0.019, "doubling_h": null, "growth_tmp": 26.947, "optimum_tmp": 26.833, "optimum_ph": 7.7, "genome_size": 4207472.204, "gc_content": 64.7, "coding_genes": 3997.0, "rRNA16S_genes": 7.0, "tRNA_genes": 50.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.235, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.03, "aerobic_respiration": 0.969, "mesophilic_range_tmp": 0.8, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.2, "bacillus_cell_shape": 0.466, "coccus_cell_shape": 0.333, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.2, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Arthrobacter", "dokdonellae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }