{ "type": "genome", "identifier": "GCF_003268815.1", "organism": "Flavobacterium lacus", "title": "Flavobacterium lacus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003268815.1", "bioproject": "PRJNA224116", "biosample": "SAMN06296443", "wgs_master": "QLSV00000000.1", "refseq_category": "reference genome", "taxid": "1353778", "species_taxid": "1353778", "organism_name": "Flavobacterium lacus", "infraspecific_name": "strain=CGMCC 1.12504", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/27", "asm_name": "ASM326881v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003268815.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/268/815/GCF_003268815.1_ASM326881v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3525384", "genome_size_ungapped": "3524912", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "37", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003268815.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3076", "protein_coding_gene_count": "3009", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-27", "dateModified": "2018-06-27", "datePublished": "2018-06-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium lacus" ], "sample_taxid": [ "1353778" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.983 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3525384", "Number of Sequences": "37", "Longest Sequences (bp)": "373054", "N50 (bp)": "209750", "Gap Ratio (%)": "0.013389", "GCcontent (%)": "34.9", "Number of CDSs": "2992", "Average Protein Length": "343.0", "Coding Ratio (%)": "87.3", "Number of rRNAs": "3", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium lacus", "strain": "strain=CGMCC 1.12504", "accession": "GCA_003268815.1", "taxid": 1353778, "species_taxid": 1353778, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1154, "total_fragments": 1156, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium piscinae", "strain": "strain=ICH-30", "accession": "GCA_004122145.1", "taxid": 2506424, "species_taxid": 2506424, "relation_to_type": "type", "validated": true, "ani": 83.6524, "matched_fragments": 760, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium orientale", "strain": "strain=CGMCC 1.12506", "accession": "GCA_014638005.1", "taxid": 1756020, "species_taxid": 1756020, "relation_to_type": "type", "validated": true, "ani": 81.9601, "matched_fragments": 563, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium filum", "strain": "strain=DSM 17961", "accession": "GCA_000425465.1", "taxid": 370974, "species_taxid": 370974, "relation_to_type": "type", "validated": true, "ani": 81.7491, "matched_fragments": 642, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquatile", "strain": "strain=LMG 4008", "accession": "GCA_000757385.1", "taxid": 245, "species_taxid": 245, "relation_to_type": "type", "validated": true, "ani": 77.8396, "matched_fragments": 291, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium dankookense", "strain": "strain=DSM 25687", "accession": "GCA_004362665.1", "taxid": 706186, "species_taxid": 706186, "relation_to_type": "type", "validated": true, "ani": 77.8121, "matched_fragments": 286, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sangjuense", "strain": "strain=GS03", "accession": "GCA_004797125.1", "taxid": 2518177, "species_taxid": 2518177, "relation_to_type": "type", "validated": true, "ani": 77.4691, "matched_fragments": 251, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cyclinae", "strain": "strain=KSM-R2A25", "accession": "GCA_021172145.1", "taxid": 2895947, "species_taxid": 2895947, "relation_to_type": "type", "validated": true, "ani": 77.4037, "matched_fragments": 243, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amnicola", "strain": "strain=LLJ-11", "accession": "GCA_004122165.1", "taxid": 2506422, "species_taxid": 2506422, "relation_to_type": "type", "validated": true, "ani": 77.3769, "matched_fragments": 197, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium proteolyticum", "strain": "strain=1Y8A", "accession": "GCA_015223105.1", "taxid": 2911683, "species_taxid": 2911683, "relation_to_type": "type", "validated": true, "ani": 77.3694, "matched_fragments": 266, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flevense", "strain": "strain=NBRC 14960", "accession": "GCA_006539745.1", "taxid": 983, "species_taxid": 983, "relation_to_type": "type", "validated": true, "ani": 77.3263, "matched_fragments": 173, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tegetincola", "strain": "strain=DSM 22377", "accession": "GCA_000425485.1", "taxid": 150172, "species_taxid": 150172, "relation_to_type": "type", "validated": true, "ani": 77.1865, "matched_fragments": 201, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amniphilum", "strain": "strain=KYPY10", "accession": "GCA_023634845.1", "taxid": 1834035, "species_taxid": 1834035, "relation_to_type": "type", "validated": true, "ani": 77.0978, "matched_fragments": 158, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=DSM 24789", "accession": "GCA_006716585.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 77.0964, "matched_fragments": 154, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium jumunjinense", "strain": "strain=HME7102", "accession": "GCA_021650975.2", "taxid": 998845, "species_taxid": 998845, "relation_to_type": "type", "validated": true, "ani": 77.0366, "matched_fragments": 194, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sediminilitoris", "strain": "strain=YSM-43", "accession": "GCA_023008245.1", "taxid": 2024526, "species_taxid": 2024526, "relation_to_type": "type", "validated": true, "ani": 77.007, "matched_fragments": 193, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003268815.1", "gtdb_species": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "lacus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }