{ "type": "genome", "identifier": "GCF_003269195.1", "organism": "Prevotella pallens", "title": "Prevotella pallens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003269195.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444284", "wgs_master": "QLTQ00000000.1", "refseq_category": "na", "taxid": "60133", "species_taxid": "60133", "organism_name": "Prevotella pallens", "infraspecific_name": "strain=DSM 18710", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/27", "asm_name": "ASM326919v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003269195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/269/195/GCF_003269195.1_ASM326919v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3053674", "genome_size_ungapped": "3052285", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "80", "contig_count": "80", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003269195.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "2540", "protein_coding_gene_count": "2386", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-27", "dateModified": "2018-06-27", "datePublished": "2018-06-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella pallens" ], "sample_taxid": [ "60133" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.863 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3053674", "Number of Sequences": "80", "Longest Sequences (bp)": "310473", "N50 (bp)": "82664", "Gap Ratio (%)": "0.045486", "GCcontent (%)": "37.4", "Number of CDSs": "2404", "Average Protein Length": "339.9", "Coding Ratio (%)": "80.3", "Number of rRNAs": "2", "Number of tRNAs": "45", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella pallens", "strain": "strain=DSM 18710", "accession": "GCA_003269195.1", "taxid": 60133, "species_taxid": 60133, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 975, "total_fragments": 979, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella pallens", "strain": "strain=ATCC 700821", "accession": "GCA_000220255.1", "taxid": 60133, "species_taxid": 60133, "relation_to_type": "type", "validated": true, "ani": 99.9462, "matched_fragments": 972, "total_fragments": 979, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella nigrescens", "strain": "strain=NCTC9336", "accession": "GCA_900454985.1", "taxid": 28133, "species_taxid": 28133, "relation_to_type": "type", "validated": true, "ani": 84.1747, "matched_fragments": 631, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella nigrescens", "strain": "strain=ATCC 33563", "accession": "GCA_000220235.1", "taxid": 28133, "species_taxid": 28133, "relation_to_type": "type", "validated": true, "ani": 84.1422, "matched_fragments": 635, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella nigrescens", "strain": "strain=FDAARGOS_1486", "accession": "GCA_019930605.1", "taxid": 28133, "species_taxid": 28133, "relation_to_type": "type", "validated": true, "ani": 84.0879, "matched_fragments": 634, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella aurantiaca", "strain": "strain=JCM 15754", "accession": "GCA_000614025.1", "taxid": 596085, "species_taxid": 596085, "relation_to_type": "type", "validated": true, "ani": 82.9805, "matched_fragments": 561, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella vespertina", "strain": "strain=A2879", "accession": "GCA_009728485.1", "taxid": 2608404, "species_taxid": 2608404, "relation_to_type": "type", "validated": true, "ani": 82.144, "matched_fragments": 130, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=ATCC 25611", "accession": "GCA_000519165.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 81.0082, "matched_fragments": 471, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=DSM 20706", "accession": "GCA_000439065.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 81.0016, "matched_fragments": 468, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella veroralis", "strain": "strain=DSM 19559", "accession": "GCA_000377625.1", "taxid": 28137, "species_taxid": 28137, "relation_to_type": "type", "validated": true, "ani": 79.9934, "matched_fragments": 125, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000220255.1", "gtdb_species": "s__Prevotella 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562, "total_fragments": 979, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.47", "min_intra_species_ani": "98.39", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000257925.1", "gtdb_species": "s__Prevotella sp000257925", "ani": 81.7833, "matched_fragments": 125, "total_fragments": 979, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.40", "min_intra_species_ani": "96.99", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.83", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_001953955.1", "gtdb_species": "s__Prevotella intermedia", "ani": 80.9788, "matched_fragments": 477, "total_fragments": 979, "gtdb_taxonomy": 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0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Prevotella", "pallens" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }