{
    "type": "genome",
    "identifier": "GCF_003284725.1",
    "organism": "Paramagnetospirillum kuznetsovii",
    "title": "Paramagnetospirillum kuznetsovii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Research Center of Biotechnology RAS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003284725.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08026813",
        "wgs_master": "PGTO00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2053833",
        "species_taxid": "2053833",
        "organism_name": "Paramagnetospirillum kuznetsovii",
        "infraspecific_name": "strain=LBB-42",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/06/29",
        "asm_name": "ASM328472v1",
        "asm_submitter": "Research Center of Biotechnology RAS",
        "gbrs_paired_asm": "GCA_003284725.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/284/725/GCF_003284725.1_ASM328472v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4405793",
        "genome_size_ungapped": "4405793",
        "gc_percent": "63.500000",
        "replicon_count": "0",
        "scaffold_count": "69",
        "contig_count": "69",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003284725.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "4235",
        "protein_coding_gene_count": "4145",
        "non_coding_gene_count": "56",
        "pubmed_id": "31038447"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-06-29",
    "dateModified": "2018-06-29",
    "datePublished": "2018-06-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paramagnetospirillum kuznetsovii"
        ],
        "sample_taxid": [
            "2053833"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Russia: Moscow region"
        ],
        "sample_host_location_id": [],
        "data_size": "1.224 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 14.0,
            "max": 14.0
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4405793",
        "Number of Sequences": "69",
        "Longest Sequences (bp)": "546444",
        "N50 (bp)": "215319",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.4",
        "Number of CDSs": "4174",
        "Average Protein Length": "312.0",
        "Coding Ratio (%)": "88.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Magnetospirillum kuznetsovii",
                "strain": "strain=LBB-42",
                "accession": "GCA_003284725.1",
                "taxid": 2053833,
                "species_taxid": 2053833,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1430,
                "total_fragments": 1434,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Magnetospirillum marisnigri",
                "strain": "strain=SP-1",
                "accession": "GCA_001650715.1",
                "taxid": 1285242,
                "species_taxid": 1285242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.3613,
                "matched_fragments": 967,
                "total_fragments": 1434,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Magnetospirillum caucaseum",
                "strain": "strain=SO-1",
                "accession": "GCA_000342045.1",
                "taxid": 1244869,
                "species_taxid": 1244869,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3459,
                "matched_fragments": 861,
                "total_fragments": 1434,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Magnetospirillum magnetotacticum",
                "strain": "strain=MS-1",
                "accession": "GCA_000829825.1",
                "taxid": 188,
                "species_taxid": 188,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9621,
                "matched_fragments": 865,
                "total_fragments": 1434,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Magnetospirillum moscoviense",
                "strain": "strain=BB-1",
                "accession": "GCA_001650635.1",
                "taxid": 1437059,
                "species_taxid": 1437059,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3697,
                "matched_fragments": 627,
                "total_fragments": 1434,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Magnetospirillum gryphiswaldense",
                "strain": "strain=MSR-1",
                "accession": "GCA_002995515.1",
                "taxid": 55518,
                "species_taxid": 55518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0122,
                "matched_fragments": 588,
                "total_fragments": 1434,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Magnetospirillum aberrantis",
                "strain": "strain=SpK",
                "accession": "GCA_011022235.1",
                "taxid": 1105283,
                "species_taxid": 1105283,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5268,
                "matched_fragments": 536,
                "total_fragments": 1434,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Magnetospirillum molischianum",
                "strain": "strain=DSM 120",
                "accession": "GCA_000294655.1",
                "taxid": 1083,
                "species_taxid": 1083,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4265,
                "matched_fragments": 348,
                "total_fragments": 1434,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseomonas oryzae",
                "strain": "strain=KCTC 42542",
                "accession": "GCA_008386565.1",
                "taxid": 1608942,
                "species_taxid": 1608942,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4434,
                "matched_fragments": 194,
                "total_fragments": 1434,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobrevis pamukkalensis",
                "strain": "strain=PK2",
                "accession": "GCA_001720135.1",
                "taxid": 1439726,
                "species_taxid": 1439726,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4286,
                "matched_fragments": 158,
                "total_fragments": 1434,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodovastum atsumiense",
                "strain": "strain=G2-11",
                "accession": "GCA_937425535.1",
                "taxid": 504468,
                "species_taxid": 504468,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3645,
                "matched_fragments": 222,
                "total_fragments": 1434,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodovarius crocodyli",
                "strain": "strain=CCP-6",
                "accession": "GCA_004005855.1",
                "taxid": 1979269,
                "species_taxid": 1979269,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2309,
                "matched_fragments": 191,
                "total_fragments": 1434,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseomonas haemaphysalidis",
                "strain": "strain=546",
                "accession": "GCA_017355405.1",
                "taxid": 2768162,
                "species_taxid": 2768162,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1556,
                "matched_fragments": 206,
                "total_fragments": 1434,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoligotrophos defluvii",
                "strain": "strain=lm1",
                "accession": "GCA_005281615.1",
                "taxid": 2561934,
                "species_taxid": 2561934,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0617,
                "matched_fragments": 138,
                "total_fragments": 1434,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium terricola",
                "strain": "strain=17Sr1-39",
                "accession": "GCA_006151805.1",
                "taxid": 2583531,
                "species_taxid": 2583531,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0183,
                "matched_fragments": 210,
                "total_fragments": 1434,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Beijerinckia mobilis",
                "strain": "strain=UQM 1969",
                "accession": "GCA_000745425.1",
                "taxid": 231434,
                "species_taxid": 231434,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7535,
                "matched_fragments": 54,
                "total_fragments": 1434,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003284725.1",
                "gtdb_species": "s__Phaeospirillum kuznetsovii",
                "ani": 100.0,
                "matched_fragments": 1430,
                "total_fragments": 1434,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Phaeospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001650715.1",
                "gtdb_species": "s__Phaeospirillum marisnigri",
                "ani": 85.3149,
                "matched_fragments": 972,
                "total_fragments": 1434,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Phaeospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903853455.1",
                "gtdb_species": "s__Phaeospirillum sp903853455",
                "ani": 83.7747,
                "matched_fragments": 937,
                "total_fragments": 1434,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Phaeospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_902729425.1",
                "gtdb_species": "s__Phaeospirillum sp902729425",
                "ani": 83.4887,
                "matched_fragments": 837,
                "total_fragments": 1434,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Phaeospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000342045.1",
                "gtdb_species": "s__Phaeospirillum caucaseum",
                "ani": 83.3637,
                "matched_fragments": 859,
                "total_fragments": 1434,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Phaeospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001511835.1",
                "gtdb_species": "s__Phaeospirillum sp001511835",
                "ani": 83.3423,
                "matched_fragments": 900,
                "total_fragments": 1434,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Phaeospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900184795.1",
                "gtdb_species": "s__Phaeospirillum sp900184795",
                "ani": 83.209,
                "matched_fragments": 835,
                "total_fragments": 1434,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Phaeospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000829825.1",
                "gtdb_species": "s__Phaeospirillum magnetotacticum",
                "ani": 82.9876,
                "matched_fragments": 861,
                "total_fragments": 1434,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Phaeospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016195125.1",
                "gtdb_species": "s__Phaeospirillum sp016195125",
                "ani": 82.5143,
                "matched_fragments": 671,
                "total_fragments": 1434,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Phaeospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902729415.1",
                "gtdb_species": "s__Phaeospirillum magnetica_A",
                "ani": 82.1591,
                "matched_fragments": 771,
                "total_fragments": 1434,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Phaeospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903901915.1",
                "gtdb_species": "s__Phaeospirillum sp903901915",
                "ani": 81.8157,
                "matched_fragments": 737,
                "total_fragments": 1434,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Phaeospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_015232485.1",
                "gtdb_species": "s__JADFZP01 sp015232485",
                "ani": 78.7991,
                "matched_fragments": 322,
                "total_fragments": 1434,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__JADFZP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.70",
                "min_intra_species_ani": "95.97",
                "mean_intra_species_af": "0.70",
                "min_intra_species_af": "0.69",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Paramagnetospirillum",
        "kuznetsovii"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}