{ "type": "genome", "identifier": "GCF_003285015.1", "organism": "Paenibacillus contaminans", "title": "Paenibacillus contaminans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003285015.1", "bioproject": "PRJNA224116", "biosample": "SAMN09478231", "wgs_master": "QMFB00000000.1", "refseq_category": "reference genome", "taxid": "450362", "species_taxid": "450362", "organism_name": "Paenibacillus contaminans", "infraspecific_name": "strain=CKOBP-6", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/30", "asm_name": "ASM328501v1", "asm_submitter": "Shanghai University", "gbrs_paired_asm": "GCA_003285015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/285/015/GCF_003285015.1_ASM328501v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10232629", "genome_size_ungapped": "10232414", "gc_percent": "51.500000", "replicon_count": "0", "scaffold_count": "104", "contig_count": "104", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003285015.1-RS_2024_03_21", "annotation_date": "2024-03-21", "total_gene_count": "8240", "protein_coding_gene_count": "8100", "non_coding_gene_count": "64", "pubmed_id": "19126735" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-30", "dateModified": "2018-06-30", "datePublished": "2018-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus contaminans" ], "sample_taxid": [ "450362" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "2.901 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10232629", "Number of Sequences": "104", "Longest Sequences (bp)": "982866", "N50 (bp)": "285136", "Gap Ratio (%)": "0.002570", "GCcontent (%)": "51.5", "Number of CDSs": "8324", "Average Protein Length": "349.9", "Coding Ratio (%)": "85.4", "Number of rRNAs": "1", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus contaminans", "strain": "strain=CKOBP-6", "accession": "GCA_003285015.1", "taxid": 450362, "species_taxid": 450362, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3364, "total_fragments": 3366, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paenibacillus ginsengarvi", "strain": "strain=KCTC 13059", "accession": "GCA_003626695.1", "taxid": 400777, "species_taxid": 400777, "relation_to_type": "type", "validated": true, "ani": 77.8308, "matched_fragments": 396, "total_fragments": 3366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus oceani", "strain": "strain=IB182363", "accession": "GCA_014705615.1", "taxid": 2772510, "species_taxid": 2772510, "relation_to_type": "type", "validated": true, "ani": 77.762, "matched_fragments": 378, "total_fragments": 3366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus hemerocallicola", "strain": "strain=KCTC 33185", "accession": "GCA_006265175.1", "taxid": 1172614, "species_taxid": 1172614, "relation_to_type": "type", "validated": true, "ani": 77.5975, "matched_fragments": 417, "total_fragments": 3366, "ani_threshold": 95, "status": "below_threshold" }, { 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"below_threshold" }, { "organism_name": "Paenibacillus turpanensis", "strain": "strain=YIM B00363", "accession": "GCA_011421635.1", "taxid": 2689078, "species_taxid": 2689078, "relation_to_type": "type", "validated": true, "ani": 76.1389, "matched_fragments": 135, "total_fragments": 3366, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003285015.1", "gtdb_species": "s__Paenibacillus_V contaminans", "ani": 100.0, "matched_fragments": 3364, "total_fragments": 3366, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__NBRC-103111;g__Paenibacillus_V", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_006265175.1", "gtdb_species": 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