{ "type": "genome", "identifier": "GCF_003286395.1", "organism": "Paraburkholderia dokdonensis", "title": "Paraburkholderia dokdonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jeju National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003286395.1", "bioproject": "PRJNA224116", "biosample": "SAMN09273370", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2211211", "species_taxid": "2211211", "organism_name": "Paraburkholderia dokdonensis", "infraspecific_name": "strain=DCT13", "isolate": "rhisosphere", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/27", "asm_name": "ASM328639v1", "asm_submitter": "Jeju National University", "gbrs_paired_asm": "GCA_003286395.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/286/395/GCF_003286395.1_ASM328639v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4404244", "genome_size_ungapped": "4404244", "gc_percent": "64.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003286395.1-RS_2024_06_24", "annotation_date": "2024-06-24", "total_gene_count": "4009", "protein_coding_gene_count": "3854", "non_coding_gene_count": "74", "pubmed_id": "30456756" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-27", "dateModified": "2018-06-27", "datePublished": "2018-06-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia dokdonensis" ], "sample_taxid": [ "2211211" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.215 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4404244", "Number of Sequences": "2", "Longest Sequences (bp)": "3130508", "N50 (bp)": "3130508", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.1", "Number of CDSs": "3925", "Average Protein Length": "324.0", "Coding Ratio (%)": "86.6", "Number of rRNAs": "8", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia sacchari", "strain": "strain=LMG 19450", "accession": "GCA_902833715.1", "taxid": 159450, "species_taxid": 159450, "relation_to_type": "type", "validated": true, "ani": 92.8329, "matched_fragments": 1146, 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"status": "below_threshold" }, { "organism_name": "Paraburkholderia oxyphila", "strain": "strain=NBRC 105797", "accession": "GCA_000685075.1", "taxid": 614212, "species_taxid": 614212, "relation_to_type": "type", "validated": true, "ani": 89.4815, "matched_fragments": 1140, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia eburnea", "strain": "strain=JCM 18070", "accession": "GCA_002917095.1", "taxid": 1189126, "species_taxid": 1189126, "relation_to_type": "type", "validated": true, "ani": 86.6447, "matched_fragments": 956, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia tropica", "strain": "strain=LMG 22274", "accession": "GCA_900109265.1", "taxid": 92647, "species_taxid": 92647, "relation_to_type": "type", "validated": true, "ani": 86.5777, "matched_fragments": 998, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia acidiphila", "strain": "strain=7Q-K02", "accession": "GCA_009789655.1", "taxid": 2571747, "species_taxid": 2571747, "relation_to_type": "type", "validated": true, "ani": 86.0387, "matched_fragments": 1005, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia nodosa", "strain": "strain=DSM 21604", "accession": "GCA_000519185.1", "taxid": 392320, "species_taxid": 392320, "relation_to_type": "type", "validated": true, "ani": 86.0296, "matched_fragments": 1013, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia hiiakae", "strain": "strain=LMG 27952", "accession": "GCA_904848665.1", "taxid": 1081782, "species_taxid": 1081782, "relation_to_type": "type", "validated": true, "ani": 85.5626, "matched_fragments": 997, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis", "strain": "strain=LMG 20358", "accession": "GCA_902833085.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 81.7388, "matched_fragments": 791, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis", "strain": "", "accession": "GCA_902499185.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 81.7175, "matched_fragments": 780, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia anthina", "strain": "strain=DSM 16086", "accession": "GCA_016836725.1", "taxid": 179879, "species_taxid": 179879, "relation_to_type": "suspected-type", "validated": true, "ani": 81.6472, "matched_fragments": 789, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": 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