{
    "type": "genome",
    "identifier": "GCF_003289475.1",
    "organism": "Campylobacter hyointestinalis subsp. lawsonii",
    "title": "Campylobacter hyointestinalis subsp. lawsonii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "USDA, ARS, WRRC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003289475.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09274393",
        "wgs_master": "QMAE00000000.1",
        "refseq_category": "na",
        "taxid": "91353",
        "species_taxid": "198",
        "organism_name": "Campylobacter hyointestinalis subsp. lawsonii",
        "infraspecific_name": "strain=CHY5",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/07/06",
        "asm_name": "ASM328947v1",
        "asm_submitter": "USDA, ARS, WRRC",
        "gbrs_paired_asm": "GCA_003289475.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/289/475/GCF_003289475.1_ASM328947v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1786312",
        "genome_size_ungapped": "1786312",
        "gc_percent": "33.500000",
        "replicon_count": "0",
        "scaffold_count": "86",
        "contig_count": "86",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003289475.1-RS_2024_09_10",
        "annotation_date": "2024-09-10",
        "total_gene_count": "1920",
        "protein_coding_gene_count": "1820",
        "non_coding_gene_count": "50",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-07-06",
    "dateModified": "2018-07-06",
    "datePublished": "2018-07-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Campylobacter hyointestinalis subsp. lawsonii"
        ],
        "sample_taxid": [
            "91353"
        ],
        "sample_host_organism": [
            "pig"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.497 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1786312",
        "Number of Sequences": "86",
        "Longest Sequences (bp)": "119211",
        "N50 (bp)": "47292",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "33.3",
        "Number of CDSs": "1762",
        "Average Protein Length": "297.1",
        "Coding Ratio (%)": "87.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Campylobacter hyointestinalis subsp. lawsonii",
                "strain": "strain=CHY5",
                "accession": "GCA_003289475.1",
                "taxid": 91353,
                "species_taxid": 198,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 552,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Campylobacter hyointestinalis subsp. lawsonii",
                "strain": "strain=CCUG 34538",
                "accession": "GCA_008802075.1",
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                "species_taxid": 198,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9997,
                "matched_fragments": 554,
                "total_fragments": 556,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Campylobacter hyointestinalis subsp. lawsonii",
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                "accession": "GCA_013372165.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9933,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Campylobacter hyointestinalis",
                "strain": "strain=NCTC11608",
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                "species_taxid": 198,
                "relation_to_type": "type",
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                "ani": 94.5917,
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                "total_fragments": 556,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Campylobacter hyointestinalis subsp. hyointestinalis",
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                "accession": "GCA_000705275.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 94.5845,
                "matched_fragments": 445,
                "total_fragments": 556,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_013372165.1",
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            },
            {
                "accession": "GCF_013372145.1",
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                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 41,
                "status": "-"
            },
            {
                "accession": "GCF_002139935.1",
                "gtdb_species": "s__Campylobacter lanienae",
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                "total_fragments": 556,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.68",
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                "num_clustered_genomes": 30,
                "status": "-"
            },
            {
                "accession": "GCA_000495505.1",
                "gtdb_species": "s__Campylobacter testudinum",
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                "mean_intra_species_ani": "99.40",
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                "num_clustered_genomes": 37,
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            },
            {
                "accession": "GCF_900475935.1",
                "gtdb_species": "s__Campylobacter fetus",
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                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter",
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            },
            {
                "accession": "GCF_002139855.1",
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            {
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                "mean_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "rRNA16S_genes": 3.0,
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        "bacillus_cell_shape": 0.35,
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    },
    "_genome_taxon": [
        "Campylobacter",
        "hyointestinalis",
        "subsp.",
        "lawsonii"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}