{ "type": "genome", "identifier": "GCF_003289645.1", "organism": "Actinomadura craniellae", "title": "Actinomadura craniellae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ren Ji Hospital School of Medicine, Shanghai Jiao Tong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003289645.1", "bioproject": "PRJNA224116", "biosample": "SAMN09453373", "wgs_master": "QLYX00000000.1", "refseq_category": "reference genome", "taxid": "2231787", "species_taxid": "2231787", "organism_name": "Actinomadura craniellae", "infraspecific_name": "strain=LHW63021", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/06", "asm_name": "ASM328964v1", "asm_submitter": "Ren Ji Hospital School of Medicine, Shanghai Jiao Tong University", "gbrs_paired_asm": "GCA_003289645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/289/645/GCF_003289645.1_ASM328964v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7503577", "genome_size_ungapped": "7503577", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "41", "contig_count": "41", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003289645.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "6990", "protein_coding_gene_count": "6860", "non_coding_gene_count": "92", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-06", "dateModified": "2018-07-06", "datePublished": "2018-07-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomadura craniellae" ], "sample_taxid": [ "2231787" ], "sample_host_organism": [ "Craniella sp." ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xisha" ], "sample_host_location_id": [], "data_size": "2.003 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7503577", "Number of Sequences": "41", "Longest Sequences (bp)": "816381", "N50 (bp)": "357298", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.0", "Number of CDSs": "6981", "Average Protein Length": "320.1", "Coding Ratio (%)": "89.3", "Number of rRNAs": "3", "Number of tRNAs": "97", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermomonospora echinospora", "strain": "strain=DSM 43163", "accession": "GCA_900108175.1", "taxid": 1992, "species_taxid": 1992, 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"ani": 80.591, "matched_fragments": 1051, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura coerulea", "strain": "strain=DSM 43675", "accession": "GCA_014208105.1", "taxid": 46159, "species_taxid": 46159, "relation_to_type": "type", "validated": true, "ani": 80.0993, "matched_fragments": 1187, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura citrea", "strain": "strain=DSM 43461", "accession": "GCA_013409045.1", "taxid": 46158, "species_taxid": 46158, "relation_to_type": "type", "validated": true, "ani": 80.0432, "matched_fragments": 1202, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura bangladeshensis", "strain": "strain=DSM 45347", "accession": "GCA_004348335.1", "taxid": 453573, "species_taxid": 453573, "relation_to_type": "type", "validated": true, "ani": 80.01, "matched_fragments": 1107, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura coerulea", "strain": "strain=JCM 3320", "accession": "GCA_014648535.1", "taxid": 46159, "species_taxid": 46159, "relation_to_type": "type", "validated": true, "ani": 80.0091, "matched_fragments": 1188, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura physcomitrii", "strain": "strain=LD22", "accession": "GCA_008923205.2", "taxid": 2650748, "species_taxid": 2650748, "relation_to_type": "type", "validated": true, "ani": 79.995, "matched_fragments": 1257, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura meyerae", "strain": "strain=DSM 44715", "accession": "GCA_900188445.1", "taxid": 240840, "species_taxid": 240840, "relation_to_type": "type", "validated": true, "ani": 79.9845, "matched_fragments": 1221, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura geliboluensis", "strain": "strain=A8036", "accession": "GCA_005889745.1", "taxid": 882440, "species_taxid": 882440, "relation_to_type": "type", "validated": true, "ani": 79.8735, "matched_fragments": 1112, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura montaniterrae", "strain": "strain=CYP1-1B", "accession": "GCA_008923365.1", "taxid": 1803903, "species_taxid": 1803903, "relation_to_type": "type", "validated": true, "ani": 79.8332, "matched_fragments": 1233, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura cremea", "strain": "strain=JCM 3308", "accession": "GCA_014648495.1", "taxid": 1991, "species_taxid": 1991, "relation_to_type": "type", "validated": true, "ani": 79.8232, "matched_fragments": 1217, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura parmotrematis", "strain": "strain=PM05-2", "accession": "GCA_019458805.1", "taxid": 2864039, "species_taxid": 2864039, "relation_to_type": "type", "validated": true, "ani": 79.8205, "matched_fragments": 1190, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura violacea", "strain": "strain=LCR2-06", "accession": "GCA_017573465.1", "taxid": 2819934, "species_taxid": 2819934, "relation_to_type": "type", "validated": true, "ani": 79.719, "matched_fragments": 1280, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura roseirufa", "strain": "", "accession": "GCA_900659635.1", "taxid": 2094049, "species_taxid": 2094049, "relation_to_type": "type", "validated": true, "ani": 79.7114, "matched_fragments": 1063, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura algeriensis", "strain": "strain=DSM 46744", "accession": "GCA_014873935.1", "taxid": 1679523, "species_taxid": 1679523, "relation_to_type": "type", "validated": true, "ani": 79.692, "matched_fragments": 1212, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura graeca", "strain": "strain=32-07", "accession": "GCA_019175365.1", "taxid": 2750812, "species_taxid": 2750812, "relation_to_type": "type", "validated": true, "ani": 79.6857, "matched_fragments": 1087, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura nitritigenes", "strain": "strain=L46", "accession": "GCA_017573545.1", "taxid": 134602, "species_taxid": 134602, "relation_to_type": "type", "validated": true, "ani": 79.6624, "matched_fragments": 1270, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura decatromicini", "strain": "strain=CYP1-5", "accession": "GCA_008121305.1", "taxid": 2604572, "species_taxid": 2604572, "relation_to_type": "type", "validated": true, "ani": 79.374, "matched_fragments": 1144, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura spongiicola", "strain": "strain=LHW52907", "accession": "GCA_003432485.1", "taxid": 2303421, "species_taxid": 2303421, "relation_to_type": "type", "validated": true, "ani": 79.2289, "matched_fragments": 976, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoallomurus purpureus", "strain": "strain=KCTC 19541", "accession": "GCA_024055795.1", "taxid": 478114, "species_taxid": 478114, "relation_to_type": "type", "validated": true, "ani": 78.8021, "matched_fragments": 896, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoallomurus spadix", "strain": "strain=KCTC 9252", "accession": "GCA_024055725.1", "taxid": 79912, "species_taxid": 79912, "relation_to_type": "type", "validated": true, "ani": 78.6523, "matched_fragments": 953, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoallomurus bryophytorum", "strain": "strain=DSM 102200", "accession": "GCA_006716425.1", "taxid": 1490222, "species_taxid": 1490222, "relation_to_type": "type", "validated": true, "ani": 78.4995, "matched_fragments": 915, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003289645.1", "gtdb_species": "s__Actinomadura_D craniellae", "ani": 100.0, "matched_fragments": 2480, "total_fragments": 2482, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Actinomadura_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": 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